TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/A.rara/genome.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADNL01000849.1| Astrammina rara contig00981, whole genome sho...    27   0.76 
gb|ADNL01002573.1| Astrammina rara contig03047, whole genome sho...    25   2.2  
gb|ADNL01002253.1| Astrammina rara contig02689, whole genome sho...    25   2.9  
gb|ADNL01001642.1| Astrammina rara contig01951, whole genome sho...    25   3.8  
gb|ADNL01000288.1| Astrammina rara contig00299, whole genome sho...    24   5.0  
gb|ADNL01002508.1| Astrammina rara contig02977, whole genome sho...    24   6.5  
gb|ADNL01002246.1| Astrammina rara contig02680, whole genome sho...    23   8.4  
gb|ADNL01000591.1| Astrammina rara contig00657, whole genome sho...    23   8.4  

>gb|ADNL01000849.1| Astrammina rara contig00981, whole genome shotgun sequence
          Length = 166

 Score = 26.9 bits (58), Expect = 0.76
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 232 WNQEMIEGVQNNSLFVIVTMISSCFTLLVKYVGGLIFCI 270
           W Q+    V +NSL ++  +I+ CF  +  Y    +FCI
Sbjct: 135 WEQQ---NVLSNSLLILTKLITLCFVRVFSY*LCKLFCI 28


>gb|ADNL01002573.1| Astrammina rara contig03047, whole genome shotgun sequence
          Length = 310

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 9/45 (20%), Positives = 24/45 (53%)
 Frame = -2

Query: 248 IVTMISSCFTLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALH 292
           + T +   F   +K +GG+ +  P+      + +C+ +++R+ +H
Sbjct: 180 MATQVCLVFCTSIKKLGGVAYFRPSPFCCGANGYCYASTMRSVVH 46


>gb|ADNL01002253.1| Astrammina rara contig02689, whole genome shotgun sequence
          Length = 4647

 Score = 25.0 bits (53), Expect = 2.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 333  HPRMFLWMLGLLNSKLVLHLMLAHLCGEEY 362
            HP MF     LLN +L  HL L HL    Y
Sbjct: 1750 HPVMFPS*QHLLNLQLYKHLQLTHLILNHY 1661


>gb|ADNL01001642.1| Astrammina rara contig01951, whole genome shotgun sequence
          Length = 237

 Score = 24.6 bits (52), Expect = 3.8
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 326 PSDIFSTHPRMFLWMLGLLNSKLVLHLMLAHLCGEEYHPFR 366
           P  +   H +   W+  L NS       +   CG+E HP R
Sbjct: 17  PETMEDYHEQFNTWLAELSNSNK*KSKYMYCKCGDEVHPIR 139


>gb|ADNL01000288.1| Astrammina rara contig00299, whole genome shotgun sequence
          Length = 412

 Score = 24.3 bits (51), Expect = 5.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 365 FRKTLVPIFYVAGHCAFCMV 384
           F +   P  Y   HC FC+V
Sbjct: 312 FARNFSPCCYATSHCFFCIV 371


>gb|ADNL01002508.1| Astrammina rara contig02977, whole genome shotgun sequence
          Length = 842

 Score = 23.9 bits (50), Expect = 6.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 153 HGCVALNVSVGTMTMASILQMGTTW 177
           H C+A++V   ++   S++ +GTTW
Sbjct: 11  HLCLAISVICFSLPPDSLVLVGTTW 85


>gb|ADNL01002246.1| Astrammina rara contig02680, whole genome shotgun sequence
          Length = 267

 Score = 23.5 bits (49), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 299 DSVLVAFTRLLPFVVINTLAGLWALYSPSDI 329
           DS  V F  +LPF ++  L  L+   S SDI
Sbjct: 120 DSYEVFFIIMLPFPILPLLRSLFRAISLSDI 212


>gb|ADNL01000591.1| Astrammina rara contig00657, whole genome shotgun sequence
          Length = 1293

 Score = 23.5 bits (49), Expect = 8.4
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +1

Query: 50  RTYEYH-----GAD-NSLVYKVLTPMNNFLVKLLPLW 80
           +T+E H     GA  N ++YK    +NN ++ ++ +W
Sbjct: 394 KTFEAHLDY**GATMNLVIYKSYNSLNNSIIPIIEVW 504


  Database: /users/rg/didac/GENOMES/A.rara/genome.fa
    Posted date:  Sep 29, 2011  8:09 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 814,179
Number of Sequences: 3231
Number of extensions: 11635
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of query: 457
length of database: 483,365
effective HSP length: 77
effective length of query: 380
effective length of database: 234,578
effective search space: 89139640
effective search space used: 89139640
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)
