TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SelI_Phytophtora infestans
         (457 letters)

Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FR824343.1| Albugo laibachii Nc14, genomic contig CONTIG_298...   248   3e-86
emb|FR824139.1| Albugo laibachii Nc14, genomic contig CONTIG_94_...    79   2e-21
emb|FR824161.1| Albugo laibachii Nc14, genomic contig CONTIG_116...    32   1.3  
emb|FR824082.1| Albugo laibachii Nc14, genomic contig CONTIG_37_...    29   8.4  
emb|FR824145.1| Albugo laibachii Nc14, genomic contig CONTIG_100...    29   8.4  

>emb|FR824343.1| Albugo laibachii Nc14, genomic contig CONTIG_298_NC14_v4_31668_238
          Length = 31668

 Score =  248 bits (634), Expect(2) = 3e-86
 Identities = 142/300 (47%), Positives = 175/300 (58%), Gaps = 57/300 (19%)
 Frame = -2

Query: 19    ALKQRVRHRSIGDGKSTYFGKYVSQEGSEKLRTYEYHGADNSLVYK-VLTPMNNFLVKLL 77
             +L +RVRHR+  +GKSTYF KYV+ EGSEKL TYEYHG DNSL+YK +LTPMNN LV+ L
Sbjct: 16343 SLNRRVRHRTTTEGKSTYFQKYVTHEGSEKLLTYEYHGGDNSLIYKHLLTPMNNKLVEYL 16164

Query: 78    PLWLAPNXXXXXXXXXXXXSHTLFVFLCPFLVGDAPWWAMVVAALALFTYQ--------- 128
             P+WLAPN            SH   ++    L     +W  +   ++ FT Q         
Sbjct: 16163 PMWLAPNVVSTIV*VL---SHREIIYF*IRLH*RDYFWLHLRMLVSSFTAQHLLERHLHG 15993

Query: 129   ----------------------------TLDNLDGKQARRTKSSSPLGLLFDHGCVALNV 160
                                         TLDNLDGKQARRTK+SSPLGLLFDHGC ALN+
Sbjct: 15992 YILLLAQPFLRIR*CGDDANCSS**FR*TLDNLDGKQARRTKTSSPLGLLFDHGCDALNM 15813

Query: 161   SVGTMTMASILQMGTTWRTLGFVLSGHFVFIFATWE-------------------YYSGS 201
             SVGT+TMA +LQ+G TW+ L FVLSGH +FI ATWE                   YY GS
Sbjct: 15812 SVGTLTMACVLQLGATWKALVFVLSGHLLFITATWEE*ATFSYNELIVSLISAIRYYCGS 15633

Query: 202   LELPLYNGPTEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSCFTLLVK 261
             L+LP  NGPTEG LI I L+ +T + G GFW QE   G QNN+LF+   + ++  TL++K
Sbjct: 15632 LQLPAINGPTEGILIAIVLQFITGIFGPGFWIQEWFMGFQNNTLFLFTVIGTTVMTLMIK 15453



 Score =  131 bits (330), Expect = 9e-31
 Identities = 61/95 (64%), Positives = 77/95 (81%)
 Frame = -3

Query: 340   MLGLLNSKLVLHLMLAHLCGEEYHPFRKTLVPIFYVAGHCAFCMVEGIYDAINEELIVRE 399
             M+   +  + LHLMLAHLCGEEY PFRKTLVPIF+VA HCAF +++G ++ INE L ++E
Sbjct: 15160 MIHCASDHM*LHLMLAHLCGEEYRPFRKTLVPIFFVAAHCAFSVLQGFHEVINEALFIKE 14981

Query: 400   FFFLSLSAAVHIVITVVWEVKNVLGVSVFTIPHSS 434
             FFFLSL + VHIVI+V++EVKNVLG+ VFTIP  S
Sbjct: 14980 FFFLSLISYVHIVISVIYEVKNVLGIPVFTIPIDS 14876



 Score = 89.7 bits (221), Expect(2) = 3e-86
 Identities = 40/76 (52%), Positives = 57/76 (75%)
 Frame = -1

Query: 283   FITSVRNALHAVRLNQDSVLVAFTRLLPFVVINTLAGLWALYSPSDIFSTHPRMFLWMLG 342
             + +S +N LHAV+   DS+LVA TRL PF++ N +  LWAL+SPS IF  +PR+FLWMLG
Sbjct: 15393 YSSSAKNVLHAVQSRNDSILVAITRLGPFIITNGMGVLWALFSPSKIFEHYPRLFLWMLG 15214

Query: 343   LLNSKLVLHLMLAHLC 358
             LL++KLV+  + + +C
Sbjct: 15213 LLSNKLVVSAISSFIC 15166


>emb|FR824139.1| Albugo laibachii Nc14, genomic contig CONTIG_94_NC14_v4_80976_251
          Length = 80976

 Score = 79.0 bits (193), Expect(2) = 2e-21
 Identities = 45/106 (42%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
 Frame = -2

Query: 52    YEYHGADNSLVYKV-LTPMNNFLVKLLPLWLAPNXXXXXXXXXXXXSHTLFVFLCPFLVG 110
             Y YH +    +    LTP     V   P+W+APN            +  + +   P    
Sbjct: 47591 YIYHPSGTYTILDTSLTPFWTRCVSFFPIWMAPNLITLLGSCTLFLTTAIQLVYSPHFSE 47412

Query: 111   DAPWWAMVVAALALFTYQTLDNLDGKQARRTKSSSPLGLLFDHGCV 156
               P W    AA  LF YQTLD LDGKQARRT SSSPLG LFDHG V
Sbjct: 47411 TPPRWIPFTAAAGLFIYQTLDALDGKQARRTGSSSPLGQLFDHGTV 47274



 Score = 42.4 bits (98), Expect(2) = 2e-21
 Identities = 48/206 (23%), Positives = 83/206 (40%), Gaps = 5/206 (2%)
 Frame = -3

Query: 154   GCVALNVSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFATWEYYSGSLELPLYNGP--- 210
             GC A+      ++ A+ +Q G  + T   + S    F  A WE Y   + +   NG    
Sbjct: 47236 GCDAICTLFTAISAAATVQFGGGFGTFFLLSSLCTTFYLAQWEEYHTGI-MTCGNGVIGV 47060

Query: 211   TEGYLIGIALKLVTAVVGVGFWNQEMIEGVQNNSLFVIVTMISSCFTLLVKYVGGLIFCI 270
             TEG  + I + L+ AV G   + Q + +  +  S       ++    LLV  V   +  +
Sbjct: 47059 TEGQFLLIGVHLIAAVFGSELYAQPIFQSQKLGS-------VTFATALLVALVASNVLLV 46901

Query: 271   PAVRFANLSMFCFITSVRNALHAVRLN--QDSVLVAFTRLLPFVVINTLAGLWALYSPSD 328
                    L     +      + +  L   Q S L+A  +L+P  ++  L+ LW       
Sbjct: 46900 -------LGNIAHVLQNAQQIPSDELGHKQVSKLLACIQLIPVALVTILSWLWISGPNEA 46742

Query: 329   IFSTHPRMFLWMLGLLNSKLVLHLML 354
              +   P +FL  +G+L   L + L+L
Sbjct: 46741 QYREFPLLFLGPIGILYVLLSVRLLL 46664


>emb|FR824161.1| Albugo laibachii Nc14, genomic contig CONTIG_116_NC14_v4_73775_212
          Length = 73775

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 257   TLLVKYVGGLIFCIPAVRFANLSMFCFITSVRNALHAVRLNQD 299
             T+L  Y+   + CIP         FC  T ++N LHA+R +QD
Sbjct: 62680 TVLGVYIFSKVECIPE------GEFCVFTDLKNNLHAIRRSQD 62790


>emb|FR824082.1| Albugo laibachii Nc14, genomic contig CONTIG_37_NC14_v4_136865_253
          Length = 136865

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 148   GLLFDHGCVALNVSVGTMTMASILQMGTTWRTLGFVLSGHFVFIFATW----EYYSGSLE 203
             G+L   GC++    + T  +   +  GTT     FV   HF  +   W      YSGSL+
Sbjct: 63913 GILPAIGCISW---ILTQAICRCIPFGTTLWHFDFVFRNHFRLLSNLWTPSQAVYSGSLD 64083

Query: 204   LPLYNG 209
             L ++ G
Sbjct: 64084 LFVFLG 64101


>emb|FR824145.1| Albugo laibachii Nc14, genomic contig CONTIG_100_NC14_v4_79208_353
          Length = 79208

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/62 (20%), Positives = 31/62 (50%)
 Frame = -1

Query: 359   GEEYHPFRKTLVPIFYVAGHCAFCMVEGIYDAINEELIVREFFFLSLSAAVHIVITVVWE 418
             GE   P   ++VP+F+ + H   C+++ +  +    L+  +  F+ LS +    + +++ 
Sbjct: 59351 GEYQDPLMSSVVPVFFRSMHWPLCIIDDV--STTPSLLTPQSLFMMLSFSFSHFLIILFA 59178

Query: 419   VK 420
              K
Sbjct: 59177 TK 59172


  Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa
    Posted date:  Sep 29, 2011  5:28 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.326    0.138    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,882,817
Number of Sequences: 3816
Number of extensions: 273806
Number of successful extensions: 1737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1224
Number of HSP's gapped (non-prelim): 915
length of query: 457
length of database: 10,913,379
effective HSP length: 104
effective length of query: 353
effective length of database: 10,516,515
effective search space: 3712329795
effective search space used: 3712329795
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
