Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.T.congolense.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: TcIL3000_10_v2.embl:subseq(1945000,11000)
         Model: protein2genome:local
     Raw score: 318
   Query range: 46 -> 237
  Target range: 5457 -> 6033

   47 : GluLysLeuArgThrTyrGluTyrHisGlyAlaAspAsnSerLeuValTyrLys<->ValLe :   66
        ...!!.|||  !! !|||:!!|||  !|||::!|||!:!.!!||||||! !::!   :!!:!
        SerAsnLeuAlaLysTyrLysTyrSerGlySerAspSerGlyLeuValSerArgTyrIleMe
 5458 : TCCAACCTGGCCAAATACAAATACAGCGGCAGCGACAGCGGCCTTGTTTCCCGATATATCAT : 5518

   67 : uThrProMetAsnAsnPheLeuValLysLeuLeuProLeuTrpLeuAlaProAsnLeuIleT :   87
        !  !|||      ||||||:!!|||!..|||:!!|||:!!   :!!|||||||||  !||||
        tGlnProTyrTrpAsnPheIleValSerLeuValProMetThrIleAlaProAsnAlaIleT
 5519 : GCAACCATATTGGAACTTTATTGTGAGCCTTGTTCCCATGACAATAGCACCCAATGCCATAA : 5581

   88 : hrLeuIleGlyLeuIleLeuValGlyGlySerHisThrLeuPheValPheLeuCysProPhe :  107
        ||:!!! !|||!!!:!::!!  !  !..!|||     !:!! ! :!!|||!!!! !  !|||
        hrIleThrGlyPheLeuMetCysLeuSerSerSerLeuValValMetPhePheTyrTyrPhe
 5582 : CGATCACTGGATTTTTGATGTGTTTATCTTCCTCACTGGTGGTGATGTTCTTCTACTACTTT : 5641

  108 : LeuValGlyAspAlaProTrpTrpAlaMetValValAlaAlaLeuAlaLeuPheThrTyrGl :  128
        ! !  !!.!!!:  !|||! !|||!.!  !:!!  !||||||!!!..!||||||  !|||||
        GlnAsnAlaGluTyrProSerTrpValTrpLeuTyrAlaAlaPheCysLeuPheCysTyrGl
 5642 : CAGAACGCGGAGTATCCGTCGTGGGTGTGGCTCTACGCTGCCTTCTGTCTCTTCTGTTACCA : 5704

  129 : nThrLeuAspAsnLeuAspGlyLysGlnAlaArgArgThrLysSerSerSerProLeuGlyL :  149
        ||||||||||  !:!!||||||||||||||||||||||||!!.|||  !||||||:!!||| 
        nThrLeuAspAlaIleAspGlyLysGlnAlaArgArgThrAsnSerValSerProValGlyG
 5705 : GACCCTTGATGCCATTGATGGAAAGCAGGCTCGCCGCACGAACTCGGTGTCCCCAGTTGGAG : 5767

  150 : euLeuPheAspHisGlyCysValAlaLeuAsnValSerValGlyThrMetThrMetAlaSer :  169
         !||||||||||||||||||! !|||:!!   ..! !! !!! !  !:!!! !:!:..!!!!
        luLeuPheAspHisGlyCysAspAlaIleLeuThrProPheValGlnLeuLysValCysCys
 5768 : AGCTCTTTGATCACGGCTGTGACGCTATTCTGACACCTTTTGTGCAGCTGAAAGTTTGCTGC : 5827

  170 : IleLeuGlnMetGlyThrThrTrpArgThrLeuGlyPheValLeuSerGlyHisPheValPh :  190
          !|||.!.!  ..! !!  !   ! !  !:!!  !.!.|||:!!|||..!  ! !!:!!||
        AlaLeuAsnThrSerProArgValThrPheValTyrMetValIleSerSerCysValLeuPh
 5828 : GCCTTGAATACCTCACCACGTGTAACATTTGTTTACATGGTAATATCTTCGTGTGTTCTTTT : 5890

  191 : eIlePheAlaThrTrpGluTyrTyrSerGlySerLeuGluLeuProLeuTyrAsnGlyProT :  211
        |  !  !  !  !  !:!!!:!   !!!|||!!!|||!!:|||  !! !   ||||||||||
        eAlaAlaIleTrpGluGlnPheValThrGlyThrLeuAspLeuGlyTyrValAsnGlyProT
 5891 : CGCTGCTATCTGGGAGCAGTTTGTGACGGGTACGTTGGACCTTGGTTACGTGAATGGTCCAA : 5953

  212 : hrGluGlyTyrLeuIleGlyIleAlaLeuLysLeuValThrAlaValValGlyValGlyPhe :  231
        ||!!:|||  !|||:!:!.!  !!.!:!!   :!!||||||:!! !!:!!..!..!.!! ! 
        hrAspGlyIleLeuLeuAlaCysGlyIlePheIleValThrSerPheLeuSerThrSerVal
 5954 : CAGATGGAATTCTGTTGGCGTGCGGTATATTTATTGTTACGTCTTTTCTGTCAACAAGTGTG : 6013

  232 : TrpAsnGlnGluMetIle :  237
        |||:!!  !  !!!::!!
        TrpAspThrProIleVal
 6014 : TGGGATACGCCAATAGTA : 6033

vulgar: SelI_Phytophtora 46 237 . TcIL3000_10_v2.embl:subseq(1945000,11000) 5457 6033 + 318 M 18 54 G 0 3 M 173 519
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
TcIL3000_10_v2.embl:subseq(1945000,11000)	exonerate:protein2genome:local	gene	5458	6033	318	+	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
TcIL3000_10_v2.embl:subseq(1945000,11000)	exonerate:protein2genome:local	cds	5458	6033	.	+	.	
TcIL3000_10_v2.embl:subseq(1945000,11000)	exonerate:protein2genome:local	exon	5458	6033	.	+	.	insertions 3 ; deletions 0
TcIL3000_10_v2.embl:subseq(1945000,11000)	exonerate:protein2genome:local	similarity	5458	6033	318	+	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 5458 47 54 ; Align 5515 65 519
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
