Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.S.arctica.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: supercont1.499:subseq(37000,10000) of Sphaeroforma arctica JP610
         Model: protein2genome:local
     Raw score: 135
   Query range: 135 -> 196
  Target range: 5312 -> 5495

  136 : LysGlnAlaArgArgThrLysSerSerSerProLeuGlyLeuLeuPheAspHisGlyCysVa :  156
        !:!|||||||||||||||  !||||||||||||||||||! !||||||||||||||||||! 
        ArgGlnAlaArgArgThrGlySerSerSerProLeuGlyGlnLeuPheAspHisGlyCysAs
 5313 : AGACAAGCCCGTCGTACCGGATCGTCCTCTCCTCTGGGCCAGTTATTCGATCACGGGTGTGA : 5373

  157 : lAlaLeuAsnValSerValGlyThrMetThrMetAlaSerIleLeuGlnMetGlyThrThrT :  177
        !::!:!!::!..!!!! !!  !|||!!:.!!! !|||:!!! !  !.!.:!!|||:!!!:!|
        pSerValSerThrThrPheLeuThrIleAlaThrAlaAlaSerGlyAsnLeuGlySerSerT
 5374 : CAGTGTGTCCACCACATTCCTGACTATCGCCACGGCTGCCAGTGGTAATTTGGGTTCCAGCT : 5436

  178 : rpArgThrLeuGlyPheValLeuSerGlyHisPheValPheIlePheAlaThrTrpGlu :  196
        ||! !||||||!.!.!!:!!!!!|||! !   .!!  !|||.!! !!:!!  !|||:!!
        rpMetThrLeuAlaLeuMetPheSerValMetIleProPhePheValSerGlnTrpGln
 5437 : GGATGACGCTTGCCCTCATGTTCTCGGTTATGATTCCCTTCTTCGTCTCCCAATGGCAG : 5495

vulgar: SelI_Phytophtora 135 196 . supercont1.499:subseq(37000,10000) 5312 5495 + 135 M 61 183
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
supercont1.499:subseq(37000,10000)	exonerate:protein2genome:local	gene	5313	5495	135	+	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
supercont1.499:subseq(37000,10000)	exonerate:protein2genome:local	cds	5313	5495	.	+	.	
supercont1.499:subseq(37000,10000)	exonerate:protein2genome:local	exon	5313	5495	.	+	.	insertions 0 ; deletions 0
supercont1.499:subseq(37000,10000)	exonerate:protein2genome:local	similarity	5313	5495	135	+	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 5313 136 183
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
