Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.P.polycephalum.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: Contig729:subseq(14024,5465)  16471 19489:[revcomp]
         Model: protein2genome:local
     Raw score: 175
   Query range: 85 -> 162
  Target range: 5455 -> 5221

   86 : IleThrLeuIleGlyLeuIleLeuValGlyGlySerHisThrLeuPheValPheLeuCysPr :  106
        :!:||||||  !|||!!!:!!!!!:!!  !  !|||:!!  !  !     !!:!! !  !||
        ValThrLeuSerGlyPheValPheIleLeuLeuSerTyrPheAlaThrSerTyrTyrHisPr
 5455 : GTGACACTCTCAGGCTTTGTATTTATACTGTTAAGTTACTTCGCGACGAGTTACTACCACCC : 5395

  107 : oPheLeuVal<->GlyAspAlaProTrpTrpAlaMetValValAlaAlaLeuAlaLeuPheT :  126
        |  !||||||     !||| !!||| !!|||  !   :!!:!!  !||||||..!:!!|||.
        oAspLeuValArgGlnAspProProArgTrpLeuTyrIleLeuAsnAlaLeuCysMetPheV
 5394 : CGATTTGGTGCGACAAGATCCGCCTAGGTGGCTCTACATATTGAACGCGCTGTGCATGTTCG : 5332

  127 : hrTyrGlnThrLeuAspAsnLeuAspGlyLysGlnAlaArgArgThrLysSerSerSerPro :  146
        .!|||||||||:!!|||   |||||||||||||||||||||||||||   ||||||||||||
        alTyrGlnThrMetAspAlaLeuAspGlyLysGlnAlaArgArgThrGlySerSerSerPro
 5331 : TGTACCAGACCATGGACGCATTGGATGGCAAGCAGGCGCGACGCACGGGCTCCAGTTCCCCT : 5272

  147 : LeuGlyLeuLeuPheAspHisGlyCysValAlaLeuAsnValSerVal :  162
        ||||||  !||||||||||||||||||! !|||:!!!.!..!  !|||
        LeuGlyGluLeuPheAspHisGlyCysAspAlaValThrThrValVal
 5271 : TTGGGCGAGCTTTTTGATCACGGTTGTGATGCAGTTACTACTGTAGTA : 5222

vulgar: SelI_Phytophtora 85 162 . Contig729:subseq(14024,5465) 5455 5221 - 175 M 24 72 G 0 3 M 53 159
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Contig729:subseq(14024,5465)	exonerate:protein2genome:local	gene	5222	5455	175	-	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
Contig729:subseq(14024,5465)	exonerate:protein2genome:local	cds	5222	5455	.	-	.	
Contig729:subseq(14024,5465)	exonerate:protein2genome:local	exon	5222	5455	.	-	.	insertions 3 ; deletions 0
Contig729:subseq(14024,5465)	exonerate:protein2genome:local	similarity	5222	5455	175	-	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 5456 86 72 ; Align 5381 110 159
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
