Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.L.tarentolae.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: Lt_contig4414  |  | 1 to 2792
         Model: protein2genome:local
     Raw score: 321
   Query range: 37 -> 237
  Target range: 1514 -> 2117

   38 : GlyLysTyrValSerGlnGluGlySerGluLysLeuArgThrTyrGluTyrHisGlyAlaAs :   58
        ..!:!!|||:!! !!! !! !  !! !   !!.||||||! !|||:!!|||  !|||.!!||
        AsnGluTyrIleProProValTyrLeuProAsnLeuArgLysTyrLysTyrSerGlyThrAs
 1515 : AATGAATATATTCCGCCGGTGTATTTGCCCAACTTGAGGAAGTACAAGTACTCTGGCACAGA : 1575

   59 : pAsnSerLeuValTyrLys<->ValLeuThrProMetAsnAsnPheLeuValLysLeuLeuP :   78
        |  !|||:!!:!!  !:!!   ||||||  !|||      ||||||:!!|||!!.|||:!!|
        pPheSerIleLeuThrGlnTyrValLeuGlnProTyrTrpAsnPheValValAsnLeuValP
 1576 : CTTCTCCATTTTGACTCAGTATGTCCTGCAGCCATACTGGAACTTTGTCGTGAACCTTGTCC : 1638

   79 : roLeuTrpLeuAlaProAsnLeuIleThrLeuIleGlyLeuIleLeuValGlyGlySerHis :   98
        ||:!!   :!!|||||||||! !||||||!!!!  |||!!!:!!:!!! !  !..!|||  !
        roMetThrIleAlaProAsnArgIleThrPheThrGlyPheLeuIleGlyMetSerSerAla
 1639 : CCATGACCATCGCGCCAAACCGCATCACCTTTACGGGGTTTCTCATTGGCATGTCCTCTGCC : 1698

   99 : ThrLeuPheValPheLeuCysProPheLeuValGlyAspAlaProTrpTrpAlaMetValVa :  119
        .!!!!!.!.|||!:!!!!! !  !|||  !! !|||! !  !||| ! |||:!!:!!  !  
        AlaPheLeuValTyrPheTyrPhePheGluGlyGlyValTyrProSerTrpSerLeuTyrTy
 1699 : GCCTTCCTGGTGTACTTCTACTTCTTTGAGGGGGGTGTCTACCCCAGCTGGTCTCTGTACTA : 1761

  120 : lAlaAlaLeuAlaLeuPheThrTyrGlnThrLeuAspAsnLeuAspGlyLysGlnAlaArgA :  140
        !||||||!!!|||||||||||||||||||||||||||  !:!!|||||||||||||||||||
        rAlaAlaPheAlaLeuPheThrTyrGlnThrLeuAspAlaIleAspGlyLysGlnAlaArgA
 1762 : CGCTGCCTTCGCGCTCTTCACCTACCAAACCCTAGATGCTATTGATGGCAAGCAGGCGCGTC : 1824

  141 : rgThrLysSerSerSerProLeuGlyLeuLeuPheAspHisGlyCysValAlaLeuAsnVal :  160
        |||||   !!!!!!||||||||||||  !||||||||||||||||||! !|||!!!  !..!
        rgThrGlyThrCysSerProLeuGlyGluLeuPheAspHisGlyCysAspAlaPheLeuThr
 1825 : GCACCGGCACCTGTAGTCCTCTCGGCGAGCTTTTCGACCACGGTTGTGATGCCTTTCTTACT : 1884

  161 : SerValGlyThrMetThrMetAlaSerIleLeuGlnMetGlyThrThrTrpArgThrLeuGl :  181
         !! !!! !  !:!:!:!:!!::!  !  !  ! ! |||! ! !!..!  !|||  !! !  
        ProPheValLeuLeuSerValSerLeuAlaThrTyrMetAspProValGluArgPheTrpLe
 1885 : CCGTTTGTGCTACTAAGTGTGAGCCTTGCCACCTACATGGACCCGGTGGAGCGCTTCTGGTT : 1947

  182 : yPheValLeuSerGlyHisPheValPheIlePheAlaThrTrpGluTyrTyrSerGlySerL :  202
        !!!.|||:!!|||..!     !:!!|||! ! !   !  !   :!!!:!  !!!!|||!!!!
        uLeuValIleSerSerMetSerLeuPheThrValIleTrpGluGlnPheSerThrGlyThrP
 1948 : GTTGGTCATCTCATCTATGAGCTTGTTCACTGTGATCTGGGAACAGTTCAGCACAGGGACGT : 2010

  203 : euGluLeuProLeuTyrAsnGlyProThrGluGlyTyrLeuIleGlyIleAlaLeuLysLeu :  222
        !!||||||  !! !  !!:!||||||:!!||||||  !:!!:!!..!  !!.!|||   :!!
        heGluLeuGlyTyrIleSerGlyProSerGluGlyIleIleLeuAsnCysValLeuPheIle
 2011 : TCGAGCTGGGCTATATCAGTGGTCCTTCGGAGGGCATCATCCTCAACTGTGTGCTTTTCATC : 2070

  223 : ValThrAlaValValGlyValGlyPheTrpAsnGlnGluMetIle :  237
        :!!:!!|||:!!  !|||! !..!.!!|||:!!  !..!   :!!
        LeuSerAlaMetTyrGlyGluSerIleTrpAspAlaSerAlaVal
 2071 : CTCTCGGCTATGTATGGCGAGTCTATCTGGGATGCGTCGGCTGTC : 2117

vulgar: SelI_Phytophtora 37 237 . Lt_contig4414 1514 2117 + 321 M 27 81 G 0 3 M 173 519
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
Lt_contig4414	exonerate:protein2genome:local	gene	1515	2117	321	+	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
Lt_contig4414	exonerate:protein2genome:local	cds	1515	2117	.	+	.	
Lt_contig4414	exonerate:protein2genome:local	exon	1515	2117	.	+	.	insertions 3 ; deletions 0
Lt_contig4414	exonerate:protein2genome:local	similarity	1515	2117	321	+	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 1515 38 81 ; Align 1599 65 519
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
