Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.G.niphandrodes.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: gi|338241093|gb|AFNH01002620.1|:subseq(9000,5000) Gregarina niphandrodes asmbl.3346, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 144
   Query range: 117 -> 174
  Target range: 2416 -> 2587

  118 : ValValAlaAlaLeuAlaLeuPheThrTyrGlnThrLeuAspAsnLeuAspGlyLysGlnAl :  138
        :!!:!!.!!|||||||||! !|||.!!||||||:!!||||||   :!!||||||||||||||
        LeuLeuThrAlaLeuAlaTyrPheAlaTyrGlnSerLeuAspAlaValAspGlyLysGlnAl
 2417 : TTGTTGACGGCTTTGGCTTACTTTGCCTACCAGTCTTTAGATGCGGTGGACGGCAAGCAGGC : 2477

  139 : aArgArgThrLysSerSerSerProLeuGlyLeuLeuPheAspHisGlyCysValAlaLeuA :  159
        ||||||||||   ! !|||||| !!||||||! !:!!.!.||||||||||||! !||||||!
        aArgArgThrGlyLeuSerSerAlaLeuGlyGlnMetMetAspHisGlyCysAspAlaLeuT
 2478 : TCGTCGTACTGGCTTGTCAAGTGCACTGGGTCAGATGATGGACCATGGGTGTGATGCGCTGA : 2540

  160 : snValSerValGlyThrMetThrMetAlaSerIleLeuGlnMetGly :  174
        ....!! !  !..!.!!.!.! !!!:..!|||  !:!!|||:!!|||
        hrThrPheTyrSerAlaPheIleIleCysSerAlaIleGlnLeuGly
 2541 : CAACCTTCTACTCCGCGTTCATAATTTGTAGCGCCATTCAACTGGGT : 2587

vulgar: SelI_Phytophtora 117 174 . gi|338241093|gb|AFNH01002620.1|:subseq(9000,5000) 2416 2587 + 144 M 57 171
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|338241093|gb|AFNH01002620.1|:subseq(9000,5000)	exonerate:protein2genome:local	gene	2417	2587	144	+	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
gi|338241093|gb|AFNH01002620.1|:subseq(9000,5000)	exonerate:protein2genome:local	cds	2417	2587	.	+	.	
gi|338241093|gb|AFNH01002620.1|:subseq(9000,5000)	exonerate:protein2genome:local	exon	2417	2587	.	+	.	insertions 0 ; deletions 0
gi|338241093|gb|AFNH01002620.1|:subseq(9000,5000)	exonerate:protein2genome:local	similarity	2417	2587	144	+	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 2417 118 171
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
