Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.F.cylindrus_2.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: scaffold_23:subseq(653000,5000) [revcomp]
         Model: protein2genome:local
     Raw score: 219
   Query range: 120 -> 234
  Target range: 3351 -> 2997

  121 : AlaLeuAlaLeuPheThrTyrGlnThrLeuAspAsnLeuAspGlyLysGlnAlaArgArgTh :  141
        !.!:!!||||||.!..!!||||||||||||||||||:!!|||||||||||||||||||||||
        GlyIleAlaLeuLeuAlaTyrGlnThrLeuAspAsnMetAspGlyLysGlnAlaArgArgTh
 3351 : GGTATAGCACTTCTAGCATATCAGACACTTGACAATATGGATGGCAAACAGGCTCGAAGGAC : 3291

  142 : rLysSerSerSerProLeuGlyLeuLeuPheAspHisGlyCysValAlaLeuAsnValSerV :  162
        |  !|||||||||||||||||||||||||||||||||||||||! !|||:!!|||  !! ! 
        rGlySerSerSerProLeuGlyLeuLeuPheAspHisGlyCysAspAlaIleAsnSerIleP
 3290 : AGGATCGAGTAGTCCGTTAGGACTTCTATTTGATCACGGTTGTGATGCGATTAATTCTATAT : 3228

  163 : alGlyThrMetThr<-><->MetAlaSerIleLeuGlnMetGlyThrThrTrpArgThrLeu :  180
        !!|||:!!:!:!.!      !!:!.!! !! !|||  !   .!!  !!.!  !  !  !:!!
        heGlySerValAsnValIleIleGlyMetAsnLeuThrProSerGluAsnMetPheGluIle
 3227 : TTGGATCTGTCAATGTCATAATCGGTATGAACTTGACACCAAGTGAGAACATGTTTGAAATT : 3168

  181 : GlyPheValLeuSerGlyHisPheVal<->PheIlePheAlaThrTrpGlu<->TyrTyrSe :  199
         !!!!.:!!:!!! !|||!  ||||||   |||  !.!!||||||||||||   !:!|||!!
        TrpLeuLeuIlePheGlyProPheValMetPheTyrIleAlaThrTrpGluGlnPheTyrTh
 3167 : TGGTTATTGATTTTCGGTCCATTTGTTATGTTTTACATCGCAACATGGGAACAATTTTATAC : 3105

  200 : rGlySerLeuGluLeuProLeuTyrAsnGlyProThrGluGlyTyrLeuIleGlyIleAlaL :  220
        !|||..!|||  !:!!|||:!!   |||||||||!:!||||||   :!!  !  !  !  !|
        rGlyGluLeuIleMetProIleIleAsnGlyProSerGluGlyValValGlyThrAlaIleL
 3104 : GGGAGAACTTATAATGCCGATCATAAATGGACCAAGTGAAGGAGTAGTTGGTACAGCCATAC : 3042

  221 : euLysLeuValThrAlaValValGlyValGlyPheTrpAsnGln :  234
        ||!..!!!:!!:!!  !  !:!!|||  !  !!:!|||.!.|||
        euSerPheIleSerTyrTrpLeuGlySerGlnTyrTrpGlnGln
 3041 : TAAGTTTCATATCATATTGGCTTGGGAGTCAATATTGGCAACAA : 2998

vulgar: SelI_Phytophtora 120 234 . scaffold_23:subseq(653000,5000) 3351 2997 - 219 M 46 138 G 0 6 M 23 69 G 0 3 M 7 21 G 0 3 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	gene	2998	3351	219	-	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	cds	2998	3351	.	-	.	
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	exon	2998	3351	.	-	.	insertions 12 ; deletions 0
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	similarity	2998	3351	219	-	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 3352 121 138 ; Align 3208 167 69 ; Align 3136 190 21 ; Align 3112 197 114
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: scaffold_23:subseq(653000,5000) [revcomp]
         Model: protein2genome:local
     Raw score: 126
   Query range: 33 -> 108
  Target range: 3672 -> 3441

   34 : SerThrTyrPheGlyLysTyrValSerGlnGluGlySerGluLysLeuArgThrTyrGluTy :   54
        ||||||  !   ||| ! |||:!!!:!:!!!!:!.!!!!:!!:!!:!!!.!  !||||||||
        SerThrSerGlyGlyTyrTyrLeuAsnGluAspAlaArgLysGlnIleHisHisTyrGluTy
 3672 : TCTACTAGTGGGGGGTACTATCTGAACGAAGATGCAAGAAAACAAATCCATCATTATGAGTA : 3612

   55 : rHisGlyAlaAspAsnSerLeuValTyrLys<->ValLeuThrProMetAsnAsnPheLeuV :   74
        | ! ||||||||||||||||||:!!|||:!!   ||||||:!!|||:!!  !   |||||||
        rLysGlyAlaAspAsnSerLeuLeuTyrGlnTyrValLeuSerProLeuAlaAlaPheLeuV
 3611 : TAAAGGAGCCGATAATTCACTTCTCTATCAATATGTTCTTTCGCCACTGGCTGCATTCCTGG : 3549

   75 : al<->LysLeuLeuProLeuTrpLeuAlaProAsnLeuIleThrLeuIleGlyLeuIleLeu :   93
        ||   !!.:!!:!!|||  !!  :!!|||||||||  !:!!|||  !|||||||||:!!|||
        alAsnAsnValValProLysSerMetAlaProAsnThrValThrThrIleGlyLeuValLeu
 3548 : TCAATAATGTTGTTCCAAAATCAATGGCTCCTAATACTGTCACAACAATTGGATTGGTTTTA : 3489

   94 : ValGlyGlySerHisThrLeuPheValPheLeuCysProPheLeu :  108
        :!!  !  !:!!:!!:!!! !!:!  !!::! !  !|||  !|||
        MetIleThrAlaTyrSerSerTyrTrpTrpTyrValProThrLeu
 3488 : ATGATCACTGCCTATTCTTCTTACTGGTGGTATGTTCCCACTTTA : 3442

vulgar: SelI_Phytophtora 33 108 . scaffold_23:subseq(653000,5000) 3672 3441 - 126 M 31 93 G 0 3 M 10 30 G 0 3 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	gene	3442	3672	126	-	.	gene_id 2 ; sequence SelI_Phytophtora ; gene_orientation .
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	cds	3442	3672	.	-	.	
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	exon	3442	3672	.	-	.	insertions 6 ; deletions 0
scaffold_23:subseq(653000,5000)	exonerate:protein2genome:local	similarity	3442	3672	126	-	.	alignment_id 2 ; Query SelI_Phytophtora ; Align 3673 34 93 ; Align 3577 65 30 ; Align 3544 75 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
