Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.F.cylindrus.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: scaffold_101:subseq(47000,10000) [revcomp]
         Model: protein2genome:local
     Raw score: 219
   Query range: 120 -> 234
  Target range: 4942 -> 4588

  121 : AlaLeuAlaLeuPheThrTyrGlnThrLeuAspAsnLeuAspGlyLysGlnAlaArgArgTh :  141
        !.!:!!||||||.!..!!||||||||||||||||||:!!|||||||||||||||||||||||
        GlyIleAlaLeuLeuAlaTyrGlnThrLeuAspAsnMetAspGlyLysGlnAlaArgArgTh
 4942 : GGTATAGCACTTCTAGCATATCAGACACTTGATAATATGGATGGCAAACAGGCTCGAAGGAC : 4882

  142 : rLysSerSerSerProLeuGlyLeuLeuPheAspHisGlyCysValAlaLeuAsnValSerV :  162
        |  !|||||||||||||||||||||||||||||||||||||||! !|||:!!|||  !! ! 
        rGlySerSerSerProLeuGlyLeuLeuPheAspHisGlyCysAspAlaIleAsnSerIleP
 4881 : AGGATCGAGTAGTCCGTTAGGACTTCTATTTGATCACGGTTGTGATGCGATTAATTCTATAT : 4819

  163 : alGlyThrMetThr<-><->MetAlaSerIleLeuGlnMetGlyThrThrTrpArgThrLeu :  180
        !!|||:!!:!:!.!      !!:!.!! !! !|||  !   .!!  !!.!  !  !  !:!!
        heGlySerValAsnValIleIleGlyMetAsnLeuThrProSerGluAsnMetPheGluIle
 4818 : TTGGATCTGTCAATGTTATAATCGGTATGAACTTGACACCAAGTGAGAACATGTTTGAAATT : 4759

  181 : GlyPheValLeuSerGlyHisPheVal<->PheIlePheAlaThrTrpGlu<->TyrTyrSe :  199
         !!!!.:!!:!!! !|||!  ||||||   |||  !.!!||||||||||||   !:!|||!!
        TrpLeuLeuIlePheGlyProPheValMetPheTyrIleAlaThrTrpGluGlnPheTyrTh
 4758 : TGGTTATTGATTTTTGGTCCATTTGTTATGTTTTACATCGCAACATGGGAACAATTTTACAC : 4696

  200 : rGlySerLeuGluLeuProLeuTyrAsnGlyProThrGluGlyTyrLeuIleGlyIleAlaL :  220
        !|||..!|||  !:!!|||:!!   |||||||||!:!||||||   :!!  !  !  !  !|
        rGlyGluLeuIleMetProIleIleAsnGlyProSerGluGlyValValGlyThrAlaIleL
 4695 : GGGAGAACTTATAATGCCGATCATAAATGGACCAAGTGAAGGAGTAGTTGGTACAGCCATAT : 4633

  221 : euLysLeuValThrAlaValValGlyValGlyPheTrpAsnGln :  234
        ||!..!!!:!!:!!  !  !:!!|||  !  !!:!|||.!.|||
        euSerPheIleSerTyrTrpLeuGlySerGlnTyrTrpGlnGln
 4632 : TAAGTTTCATATCATATTGGCTTGGGAGTCAATATTGGCAACAA : 4589

vulgar: SelI_Phytophtora 120 234 . scaffold_101:subseq(47000,10000) 4942 4588 - 219 M 46 138 G 0 6 M 23 69 G 0 3 M 7 21 G 0 3 M 38 114
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	gene	4589	4942	219	-	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	cds	4589	4942	.	-	.	
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	exon	4589	4942	.	-	.	insertions 12 ; deletions 0
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	similarity	4589	4942	219	-	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 4943 121 138 ; Align 4799 167 69 ; Align 4727 190 21 ; Align 4703 197 114
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: scaffold_101:subseq(47000,10000) [revcomp]
         Model: protein2genome:local
     Raw score: 127
   Query range: 33 -> 108
  Target range: 5263 -> 5032

   34 : SerThrTyrPheGlyLysTyrValSerGlnGluGlySerGluLysLeuArgThrTyrGluTy :   54
        ||||||  !   ||| ! |||:!!!:!:!!!!:!.!!!!:!!:!!:!!!:!  !||||||||
        SerThrSerGlyGlyTyrTyrLeuAsnGluAspAlaArgLysGlnIleGlnHisTyrGluTy
 5263 : TCTACTAGTGGAGGGTACTATCTGAACGAAGATGCAAGAAAACAAATCCAACATTATGAGTA : 5203

   55 : rHisGlyAlaAspAsnSerLeuValTyrLys<->ValLeuThrProMetAsnAsnPheLeuV :   74
        | ! ||||||||||||||||||:!!|||:!!   ||||||:!!|||:!!  !   |||||||
        rLysGlyAlaAspAsnSerLeuLeuTyrGlnTyrValLeuSerProLeuAlaAlaPheLeuV
 5202 : CAAAGGAGCCGATAATTCACTTCTCTATCAATATGTTCTTTCGCCACTGGCTGCATTCCTGG : 5140

   75 : al<->LysLeuLeuProLeuTrpLeuAlaProAsnLeuIleThrLeuIleGlyLeuIleLeu :   93
        ||   !!.:!!:!!|||  !!  :!!|||||||||  !:!!|||  !|||||||||:!!|||
        alAsnAsnValValProLysSerMetAlaProAsnThrValThrThrIleGlyLeuValLeu
 5139 : TCAATAATGTTGTTCCAAAATCAATGGCTCCTAATACTGTCACAACTATTGGATTGGTTTTA : 5080

   94 : ValGlyGlySerHisThrLeuPheValPheLeuCysProPheLeu :  108
        :!!  !  !:!!:!!:!!! !!:!  !!::! !  !|||  !|||
        MetIleThrAlaTyrSerSerTyrTrpTrpTyrValProThrLeu
 5079 : ATGATCACTGCCTATTCTTCTTACTGGTGGTATGTTCCCACTTTA : 5033

vulgar: SelI_Phytophtora 33 108 . scaffold_101:subseq(47000,10000) 5263 5032 - 127 M 31 93 G 0 3 M 10 30 G 0 3 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	gene	5033	5263	127	-	.	gene_id 2 ; sequence SelI_Phytophtora ; gene_orientation .
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	cds	5033	5263	.	-	.	
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	exon	5033	5263	.	-	.	insertions 6 ; deletions 0
scaffold_101:subseq(47000,10000)	exonerate:protein2genome:local	similarity	5033	5263	127	-	.	alignment_id 2 ; Query SelI_Phytophtora ; Align 5264 34 93 ; Align 5168 65 30 ; Align 5135 75 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
