Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.D.fasciculatum_2.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: gi|328873752|gb|GL883009.1|:subseq(1248000,6000) Dictyostelium fasciculatum unplaced genomic scaffold Scf_Dfasci-G-o-33e01.r1-3, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 250
   Query range: 40 -> 155
  Target range: 4236 -> 3798

   41 : ValSerGlnGluGlySerGluLysLeuArgThrTyrGluTyrHisGlyAlaAspAsnSerLe :   61
        :!!|||.!.:!!!.!! !!  !!.|||  !!.!:!!:!!|||  !|||  !|||:!!|||||
        LeuSerAspGlnAlaLeuValAsnLeuSerAsnHisLysTyrSerGlyIleAspAspSerLe
 4236 : TTATCCGACCAAGCTTTAGTCAATCTATCAAATCATAAATACTCTGGTATAGATGACAGTCT : 4176

   62 : uVal<->TyrLysValLeuThrProMetAsnAsnPheLeuValLysLeuLeuProLeuTrpL :   81
        |:!!   ||| ! ||||||! !! !      |||!:!! !|||:!!|||:!!|||||||||:
        uLeuAlaTyrTyrValLeuArgHisTyrTrpAsnTyrCysValGluLeuValProLeuTrpV
 4175 : ATTAGCATATTATGTTCTCAGACACTATTGGAACTATTGTGTAGAGTTGGTTCCATTATGGG : 4113

   82 : euAlaProAsnLeu  >>>> Target Intron 1 >>>>  IleThrLeuIleGlyLeuI :   92
        !!||||||||||||            90 bp            |||||||||! !|||  !|
        alAlaProAsnLeu++                         ++IleThrLeuThrGlyThrI
 4112 : TTGCTCCTAATCTAgt.........................agATTACATTGACAGGAACAA : 3990

   93 : leLeuValGlyGlySerHisThrLeuPheValPheLeuCysProPheLeuValGlyAspAla :  112
        ||  !:!!  !  !|||  !  !:!! !!! !!::! !   |||  !! !! !|||  !  !
        leGlyIleIleIleSerPheLeuIleValGlyTrpTyrThrProAsnTyrGluGlyIleLeu
 3989 : TAGGTATTATTATAAGCTTTTTAATAGTTGGTTGGTATACACCAAACTATGAAGGTATCCTT : 3930

  113 : ProTrpTrpAlaMetValValAlaAlaLeuAlaLeuPheThrTyrGlnThrLeuAspAsnLe :  133
        |||   |||!.!   :!!:!!||||||  !|||||||||  !|||||||||:!!||||||:!
        ProThrTrpValTyrLeuLeuAlaAlaAlaAlaLeuPhePheTyrGlnThrMetAspAsnVa
 3929 : CCAACATGGGTGTATTTGTTGGCTGCAGCTGCCCTCTTTTTCTATCAAACAATGGATAATGT : 3867

  134 : uAspGlyLysGlnAlaArgArgThrLysSerSerSerProLeuGlyLeuLeuPheAspHisG :  154
        !||||||||||||||||||||||||  !||||||||||||||||||! !|||||||||||||
        lAspGlyLysGlnAlaArgArgThrGlySerSerSerProLeuGlyGlnLeuPheAspHisG
 3866 : AGATGGTAAACAAGCTAGAAGAACTGGAAGTAGTTCTCCACTAGGTCAATTATTCGATCATG : 3804

  155 : lyCys :  155
        |||||
        lyCys
 3803 : GTTGT : 3799

vulgar: SelI_Phytophtora 40 155 . gi|328873752|gb|GL883009.1|:subseq(1248000,6000) 4236 3798 - 250 M 22 66 G 0 3 M 23 69 5 0 2 I 0 86 3 0 2 M 70 210
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	gene	3799	4236	250	-	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation +
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	cds	4099	4236	.	-	.	
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	exon	4099	4236	.	-	.	insertions 3 ; deletions 0
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	splice5	4097	4098	.	-	.	intron_id 1 ; splice_site "GT"
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	intron	4009	4098	.	-	.	intron_id 1
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	splice3	4009	4010	.	-	.	intron_id 0 ; splice_site "AG"
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	cds	3799	4008	.	-	.	
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	exon	3799	4008	.	-	.	insertions 0 ; deletions 0
gi|328873752|gb|GL883009.1|:subseq(1248000,6000)	exonerate:protein2genome:local	similarity	3799	4236	250	-	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 4237 41 66 ; Align 4168 63 69 ; Align 4009 86 210
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
