Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.D.discoideum_AX4_2.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: gi|256541943|gb|CM000151.3|:subseq(4935000,11000) Dictyostelium discoideum AX4 chromosome 2, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 197
   Query range: 114 -> 232
  Target range: 5706 -> 6060

  115 : TrpAlaMetValValAlaAlaLeuAlaLeuPheThrTyrGlnThrLeuAspAsnLeuAspGl :  135
        |||!.!   :!! !!|||!.!:!!  !:!!|||! !|||..!! !:!!||||||:!!|||||
        TrpValTyrLeuPheAlaGlyMetMetIlePheIleTyrMetMetMetAspAsnIleAspGl
 5707 : TGGGTTTATTTATTTGCAGGAATGATGATATTCATTTATATGATGATGGACAATATCGATGG : 5767

  136 : yLysGlnAlaArgArgThrLysSerSerSerProLeuGlyLeuLeuPheAspHisGlyCysV :  156
        ||||||||||||||||||||||!!!|||||||||||||||  !||||||||||||||||||!
        yLysGlnAlaArgArgThrLysThrSerSerProLeuGlyGluLeuPheAspHisGlyCysA
 5768 : TAAACAAGCAAGAAGAACAAAAACATCATCCCCATTGGGTGAATTATTCGACCACGGATGCG : 5830

  157 : alAlaLeuAsnValSerValGlyThrMetThrMetAlaSerIleLeuGlnMetGlyThrThr :  176
         !:!!|||  !..!.!!:!!  ! !!:!!! !:!:!.!! !   :!!   !!:     !!:!
        spSerLeuCysThrGlyLeuLeuProLeuIleValGlyIleSerMetGlyIle---ArgSer
 5831 : ACTCGTTATGCACTGGACTGCTTCCATTGATAGTCGGTATTTCGATGGGTATT---CGTAGC : 5887

  177 : TrpArgThrLeuGlyPheValLeuSerGlyHisPheValPheIlePheAlaThrTrp<->Gl :  196
        |||..!! !|||  !    !!:!!:!!!.!   .!.  !|||  !!!.|||  !|||   ||
        TrpGluIleLeuIleAlaPheMetAlaAlaThrIleProPheTyrLeuAlaHisTrpGluGl
 5888 : TGGGAGATCCTAATTGCATTTATGGCAGCCACAATACCATTCTACTTAGCCCACTGGGAGGA : 5950

  197 : uTyrTyrSerGlySerLeuGluLeuProLeuTyrAsnGlyProThrGluGlyTyrLeuIleG :  217
        ||||!:!!!!  !  !|||! !|||  !  !!  |||||||||||||||!.! ! ! !!!:!
        uTyrPheThrHisHisLeuValLeuGlyAlaLeuAsnGlyProThrGluAlaGluCysMetA
 5951 : ATACTTCACCCACCATCTTGTATTGGGCGCATTGAATGGCCCAACCGAGGCAGAGTGTATGG : 6013

  218 : lyIleAlaLeuLysLeuValThrAlaValValGlyValGlyPheTrp :  232
        .!|||  !!!!   !!!:!!|||!.!:!! !!|||  ! !!.!!|||
        laIleLeuPheCysPheLeuThrGlyIlePheGlyGlnTrpIleTrp
 6014 : CAATATTGTTCTGTTTCCTCACTGGTATATTTGGTCAATGGATTTGG : 6060

vulgar: SelI_Phytophtora 114 232 . gi|256541943|gb|CM000151.3|:subseq(4935000,11000) 5706 6060 + 197 M 59 177 G 1 0 M 21 63 G 0 3 M 37 111
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|256541943|gb|CM000151.3|:subseq(4935000,11000)	exonerate:protein2genome:local	gene	5707	6060	197	+	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation .
gi|256541943|gb|CM000151.3|:subseq(4935000,11000)	exonerate:protein2genome:local	cds	5707	6060	.	+	.	
gi|256541943|gb|CM000151.3|:subseq(4935000,11000)	exonerate:protein2genome:local	exon	5707	6060	.	+	.	insertions 3 ; deletions 1
gi|256541943|gb|CM000151.3|:subseq(4935000,11000)	exonerate:protein2genome:local	similarity	5707	6060	197	+	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 5707 115 177 ; Align 5884 175 63 ; Align 5950 196 111
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
