Command line: [exonerate -m p2g --showtargetgff -q query.selI.P.infestans.fa -t SelI.D.discoideum_AX4.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: SelI_Phytophtora infestans
        Target: gi|93569092|gb|CM000152.2|:subseq(1286000,10000) Dictyostelium discoideum AX4 chromosome 3, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 305
   Query range: 82 -> 232
  Target range: 4984 -> 5518

   83 : ProAsnLeuIleThrLeuIleGlyLeuIleLeuValGlyGlySerHisThrLeuPheValPh :  103
        ||||||:!!|||||||||:!!||||||:!!! !  !  !|||! !:!!  !:!!.!.  ! !
        ProAsnIleIleThrLeuValGlyLeuLeuCysAsnIleGlyMetTyrLeuIleMetTyrVa
 4985 : CCAAATATTATAACATTAGTAGGTTTATTATGTAATATTGGAATGTATTTGATTATGTATGT : 5045

  104 : eLeuCysProPheLeuValGlyAspAlaProTrpTrpAlaMetValValAlaAlaLeuAlaL :  124
        !! !||||||   |||..!! !!!:|||||| ! |||..!    !!!.!!.!|||!!!  !:
        lHisCysProThrLeuThrGluGluAlaProArgTrpCysTyrPheAlaValAlaPheLeuI
 5046 : TCATTGTCCAACATTAACCGAAGAAGCTCCAAGATGGTGTTATTTTGCTGTTGCATTTTTAA : 5108

  125 : euPheThrTyrGlnThrLeuAspAsnLeuAspGlyLysGlnAlaArgArgThrLysSerSer :  144
        !!|||.!!||||||||||||||||||:!!||||||||||||||||||!:!||||||||||||
        lePheAlaTyrGlnThrLeuAspAsnValAspGlyLysGlnAlaArgLysThrLysSerSer
 5109 : TTTTTGCCTATCAAACATTGGATAATGTTGATGGTAAACAAGCAAGAAAAACAAAATCATCC : 5168

  145 : SerProLeuGlyLeuLeuPheAspHisGlyCysValAlaLeuAsnValSer  >>>> Targ :  162
        ||||||||||||  !||||||||||||! !|||! !||||||!:!|||:!!           
        SerProLeuGlyGluLeuPheAspHisValCysAspAlaLeuSerValAla++         
 5169 : TCACCATTGGGTGAATTATTTGACCATGTTTGTGATGCTTTAAGTGTTGCTgt......... : 5224

  163 : et Intron 1 >>>>  ValGlyThrMetThrMetAlaSerIleLeuGlnMetGlyThrTh :  176
         84 bp            :!!  !.!!!!:..!|||:!!:!!! !|||::!!!:||| !!  
                        ++MetPheAlaIleValMetSerAlaThrLeuArgIleGlyProTy
 5225 : ................agATGTTTGCAATTGTAATGTCAGCAACATTAAGAATTGGACCATA : 5348

  177 : rTrpArgThrLeuGlyPheValLeuSerGlyHisPheValPheIlePheAlaThrTrpGluT :  197
        !|||! !  !!!!.!!|||:!!:!!.!!  !       !!!:!:!!     !  !  !||||
        rTrpThrPhePheSerPheIleValGlyMetTrpProPheTyrLeuAlaHisTrpGluGluT
 5349 : TTGGACATTTTTTAGTTTTATAGTTGGAATGTGGCCATTCTATTTAGCACATTGGGAGGAAT : 5411

  198 : yrTyrSerGlySerLeuGluLeuProLeuTyrAsnGlyProThrGluGlyTyrLeuIleGly :  217
        ||:!!:!!|||! !|||! !:!!  !  !!:!|||||||||||||||!.! ! :!!:!!  !
        yrHisAlaGlyIleLeuValMetGlyGluPheAsnGlyProThrGluAlaGlnValLeuPhe
 5412 : ATCATGCAGGTATTTTGGTGATGGGTGAATTTAATGGTCCAACCGAAGCTCAAGTTTTATTC : 5471

  218 : IleAlaLeuLysLeuValThrAlaValValGlyValGlyPheTrp :  232
        !!:  !:!!:!!:!!:!!|||!.!:!! !!|||  !! !.!!|||
        MetIleIleGluIleIleThrGlyIlePheGlySerAspIleTrp
 5472 : ATGATCATTGAAATCATTACAGGTATTTTTGGTTCCGATATTTGG : 5518

vulgar: SelI_Phytophtora 82 232 . gi|93569092|gb|CM000152.2|:subseq(1286000,10000) 4984 5518 + 305 M 79 237 5 0 2 I 0 80 3 0 2 M 71 213
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	gene	4985	5518	305	+	.	gene_id 1 ; sequence SelI_Phytophtora ; gene_orientation +
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	cds	4985	5221	.	+	.	
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	exon	4985	5221	.	+	.	insertions 0 ; deletions 0
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	splice5	5222	5223	.	+	.	intron_id 1 ; splice_site "GT"
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	intron	5222	5305	.	+	.	intron_id 1
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	splice3	5304	5305	.	+	.	intron_id 0 ; splice_site "AG"
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	cds	5306	5518	.	+	.	
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	exon	5306	5518	.	+	.	insertions 0 ; deletions 0
gi|93569092|gb|CM000152.2|:subseq(1286000,10000)	exonerate:protein2genome:local	similarity	4985	5518	305	+	.	alignment_id 1 ; Query SelI_Phytophtora ; Align 4985 83 237 ; Align 5306 162 213
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
