TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSP, [Se user]; [Dictyostelium discoideum AX4
(Eukaryota/Dictyosteliida)]
         (227 letters)

Database: /users/rg/didac/GENOMES/T.congolense/genome.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TcIL3000_10_v2.embl                                                    28   3.8  
T.congo.pschr.7                                                        28   3.8  

>TcIL3000_10_v2.embl 
          Length = 3612457

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 26      STPLISKTNDEEKANIGISSTSNSPQEEQT 55
               ST  +S   DE K ++GISSTS  P    T
Sbjct: 2166273 STV*VSTVFDERKESVGISSTSTVPDTSDT 2166362


>T.congo.pschr.7 
          Length = 2148087

 Score = 28.1 bits (61), Expect = 3.8
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 116   QYHFHKCKK-RPSDRGHWIKFGPFYLTAIAVPLA 148
             Q H H CK+   + RG  + F PFY T  + PLA
Sbjct: 78230 QTHTHTCKRIYCTGRGSVLGFFPFYFTQNSFPLA 78331


  Database: /users/rg/didac/GENOMES/T.congolense/genome.fa
    Posted date:  Sep 29, 2011  4:47 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,000,788
Number of Sequences: 11
Number of extensions: 90377
Number of successful extensions: 412
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 374
Number of HSP's gapped (non-prelim): 108
length of query: 227
length of database: 7,429,315
effective HSP length: 94
effective length of query: 133
effective length of database: 7,428,281
effective search space: 987961373
effective search space used: 987961373
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
