TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSP, [Se user]; [Dictyostelium discoideum AX4
(Eukaryota/Dictyosteliida)]
         (227 letters)

Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFNH01002379.1| Gregarina niphandrodes asmbl.3122, whole geno...    28   1.9  
gb|AFNH01002330.1| Gregarina niphandrodes asmbl.3076, whole geno...    26   9.5  

>gb|AFNH01002379.1| Gregarina niphandrodes asmbl.3122, whole genome shotgun sequence
          Length = 14061

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 144  AVPLATFDILRHILVDNSIWTIHSFISPAAYRPGC 178
            A P+ TF ILR ILV   I  +H   +P++    C
Sbjct: 1063 AQPIGTFPILREILVRERISIVHGHQAPSSLTLEC 959


>gb|AFNH01002330.1| Gregarina niphandrodes asmbl.3076, whole genome shotgun sequence
          Length = 32476

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = -3

Query: 156  ILVDNSIWTI---HSFISPAAYRPGCENENITCLSVMGWFSAIVFTYTGYACLLVGTIWA 212
            I+V   +W I   HSF      R  C   ++  L  + W + I   + G  C L   +WA
Sbjct: 2798 IIVGFVVWEIM*RHSF------RTVCSYIDVEYLWFLSWCTDIRV*FQGVRC*LWVLVWA 2637

Query: 213  ADLIPK 218
            + L PK
Sbjct: 2636 SLLRPK 2619


  Database: /users/rg/didac/GENOMES/G.niphandrodes/genome.fa
    Posted date:  Sep 29, 2011 11:25 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.321    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,362,947
Number of Sequences: 3680
Number of extensions: 64981
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of query: 227
length of database: 5,120,956
effective HSP length: 91
effective length of query: 136
effective length of database: 4,786,076
effective search space: 650906336
effective search space used: 650906336
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
