TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MSP, [Se user]; [Dictyostelium discoideum AX4
(Eukaryota/Dictyosteliida)]
         (227 letters)

Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|FR824198.1| Albugo laibachii Nc14, genomic contig CONTIG_153...    28   5.3  
emb|FR824261.1| Albugo laibachii Nc14, genomic contig CONTIG_216...    28   5.3  
emb|FR824267.1| Albugo laibachii Nc14, genomic contig CONTIG_222...    28   5.3  
emb|FR824184.1| Albugo laibachii Nc14, genomic contig CONTIG_139...    28   6.9  

>emb|FR824198.1| Albugo laibachii Nc14, genomic contig CONTIG_153_NC14_v4_59437_232
          Length = 59437

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 28    PLISKTNDEEKANIGISSTSNSPQEEQ 54
             P+I KTNDEE+   G SS     ++E+
Sbjct: 34576 PIIRKTNDEEEIEEGESSEGEGEEDEE 34496


>emb|FR824261.1| Albugo laibachii Nc14, genomic contig CONTIG_216_NC14_v4_44607_233
          Length = 44607

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = -2

Query: 107   TLSILSNLAQYHFHKCKKRPSDRGHWIKFGPFYLTAIAVPLATFDILRHILVDNSIWTIH 166
             T + +S  +  H   C  R    GH  K     LT I+V L T      +L+ +++ TIH
Sbjct: 11654 TFTQISPRSFIHSASCCSRAKVNGHVSKANCSKLTRISV*LCTLFRSTRLLITSTL*TIH 11475

Query: 167   SF 168
              F
Sbjct: 11474 RF 11469


>emb|FR824267.1| Albugo laibachii Nc14, genomic contig CONTIG_222_NC14_v4_43488_227
          Length = 43488

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 118  HFHKCKKRPSDRGHWIKFGP 137
            H HKC +RP  +  W+K  P
Sbjct: 3318 HLHKCWRRPYTKAGWLKLWP 3259


>emb|FR824184.1| Albugo laibachii Nc14, genomic contig CONTIG_139_NC14_v4_67358_243
          Length = 67358

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
 Frame = +3

Query: 101   SLTFAITLSILSNLAQYHFHKCKKRPSDRGHWI--KFGPFYLTAIAVPLATFDILRHILV 158
             SL + + LS L +    HF +   RP  RGH    +F   YLT +          R +  
Sbjct: 38139 SLFYHLILSTLGSPLSTHFSRLTNRPRMRGHAFASRFRQSYLTRLW-------YTRCLRF 38297

Query: 159   DNSIWTIHSFISPAAYRPGCENENITCLSVMGWFSAIV 196
                 W I S  +   Y P C +    C+ +   FS IV
Sbjct: 38298 SRKRW-ILSMRASGEYAPICRS---LCVHLFSKFSDIV 38399


  Database: /users/rg/didac/GENOMES/A.laibachii_Nc14/genome.fa
    Posted date:  Sep 29, 2011  5:28 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,671,638
Number of Sequences: 3816
Number of extensions: 128979
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 419
length of query: 227
length of database: 10,913,379
effective HSP length: 96
effective length of query: 131
effective length of database: 10,547,043
effective search space: 1381662633
effective search space used: 1381662633
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
