Command line: [exonerate -m p2g --showtargetgff -q query.MSP.D.discoideum_AX4.fa -t MSP.D.fasciculatum.fastasubseq.fa]
Hostname: [localhost.localdomain]

C4 Alignment:
------------
         Query: MSP, [Se user]; [Dictyostelium discoideum AX4 (Eukaryota/Dictyosteliida)]
        Target: gi|328868227|gb|GL883021.1|:subseq(1092019,2750) Dictyostelium fasciculatum unplaced genomic scaffold Scf_ET2XIPL01COFD4-5, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 658
   Query range: 23 -> 227
  Target range: 2605 -> 1999

   24 : AspGluSerThrProLeuIleSerLysThrAsnAspGluGluLysAlaAsnIleGlyIleSe :   44
        :!!||||||:!!||||||:!!!:!!!.!.!|||  !!!:|||      :!!:!!! !:!!:!
        AsnGluSerSerProLeuLeuAsnAsnAsnAsnIleAspGlu------AspValValValAl
 2605 : AATGAATCCTCACCATTATTAAACAACAACAACATTGACGAA------GACGTCGTCGTCGC : 2551

   45 : rSerThrSerAsnSerProGlnGluGluGlnThrLysLysProLeuPheIleSerIleLeuT :   65
        !..!  !|||!.!:!!  !  !|||:!!:!!!:!|||||||||||||||:!!:!!|||  !.
        aAspAspSerThrAlaValGlyGluLysGluSerLysLysProLeuPheValAlaIleAlaA
 2550 : TGACGACTCTACTGCCGTTGGAGAAAAGGAAAGTAAGAAACCATTATTTGTAGCAATTGCTG : 2488

   66 : hrLeuLeuIleSerIleProAlaLeuValGlySerUnkCysTrpProValLeuIleAlaSer :   85
        !!:!!||||||||||||||||||||||||||||||   |||||||||:!!|||:!:||||||
        laIleLeuIleSerIleProAlaLeuValGlySer***CysTrpProLeuLeuValAlaSer
 2487 : CTATTTTGATTTCTATTCCTGCTCTTGTAGGTAGTTGATGTTGGCCTCTTTTGGTGGCATCC : 2428

   86 : LeuSerGlyValAlaValSerAlaGlySerValGluLeuAlaHisSerLeuThrPheAlaIl :  106
        :!!  !|||:!!|||!.!!!!  !|||||||||!  !!!||||||:!!:!!|||||||||||
        IleLeuGlyIleAlaAlaThrGlnGlySerValGlyPheAlaHisAlaIleThrPheAlaIl
 2427 : ATCCTCGGTATTGCCGCCACCCAAGGTTCCGTAGGTTTTGCTCATGCAATTACCTTTGCTAT : 2365

  107 : eThrLeuSerIleLeuSerAsnLeuAlaGlnTyrHisPheHisLysCysLysLysArgProS :  127
        |!:!|||||||||:!!!!!||||||||||||||||||||||||||||||!  :!!||| !!|
        eSerLeuSerIleMetThrAsnLeuAlaGlnTyrHisPheHisLysCysThrGlnArgAlaS
 2364 : TAGTTTGTCGATCATGACAAATCTCGCCCAGTACCATTTCCACAAGTGCACTCAACGTGCAA : 2302

  128 : erAspArgGlyHisTrpIleLysPheGlyProPheTyrLeuThrAlaIleAlaValProLeu :  147
        |||||||||||||||||  !|||||||||||||||||||||||||||||||||!.!||||||
        erAspArgGlyHisTrpHisLysPheGlyProPheTyrLeuThrAlaIleAlaAlaProLeu
 2301 : GCGATCGTGGACATTGGCACAAGTTTGGCCCATTCTATCTCACTGCTATTGCCGCCCCATTG : 2242

  148 : AlaThrPheAspIleLeuArgHisIleLeuValAspAsnSerIleTrpThrIleHisSerPh :  168
        ||||||.!!||||||||||||||||||||||||||||||.!!:!!||||||  !!!.:!!  
        AlaThrIleAspIleLeuArgHisIleLeuValAspAsnGlyLeuTrpThrProGlnAlaHi
 2241 : GCCACTATCGACATTTTACGTCACATCCTCGTCGATAATGGACTCTGGACACCACAGGCACA : 2179

  169 : eIleSerProAlaAlaTyrArgProGlyCysGluAsnGluAsnIleThrCysLeuSerValM :  189
        !   ||||||!.!||||||||||||||||||   !:!!  !.!|||! !||||||!!!  !!
        sTrpSerProValAlaTyrArgProGlyCysThrSerAlaThrIleLysCysLeuThrProT
 2178 : CTGGAGTCCAGTCGCCTATCGTCCTGGCTGCACCAGTGCCACTATTAAATGTCTCACCCCCA : 2116

  190 : etGlyTrpPheSerAlaIleValPheThrTyrThrGlyTyrAlaCysLeuLeuValGlyThr :  209
          |||||||||! !!.!||| !!! !|||||||||||||||  !   |||:!!:!!||||||
        hrGlyTrpPhePheValIlePheCysThrTyrThrGlyTyrIleLeuLeuMetIleGlyThr
 2115 : CCGGGTGGTTCTTTGTCATCTTTTGTACCTACACTGGTTACATCCTACTCATGATTGGTACA : 2056

  210 : IleTrpAlaAlaAspLeuIleProLysIleLysLysValTrpThrGlnLeuArg :  227
        :!!|||..!|||||||||  ! !!||||||:::|||!.!|||! !|||||||||
        ValTrpCysAlaAspLeuHisThrLysIleArgLysAlaTrpArgGlnLeuArg
 2055 : GTCTGGTGTGCTGATCTTCACACAAAGATTCGTAAAGCTTGGAGACAACTTCGT : 2000

vulgar: MSP, 23 227 . gi|328868227|gb|GL883021.1|:subseq(1092019,2750) 2605 1999 - 658 M 14 42 G 2 0 M 188 564
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2011-11-24
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|328868227|gb|GL883021.1|:subseq(1092019,2750)	exonerate:protein2genome:local	gene	2000	2605	658	-	.	gene_id 1 ; sequence MSP, ; gene_orientation .
gi|328868227|gb|GL883021.1|:subseq(1092019,2750)	exonerate:protein2genome:local	cds	2000	2605	.	-	.	
gi|328868227|gb|GL883021.1|:subseq(1092019,2750)	exonerate:protein2genome:local	exon	2000	2605	.	-	.	insertions 0 ; deletions 2
gi|328868227|gb|GL883021.1|:subseq(1092019,2750)	exonerate:protein2genome:local	similarity	2000	2605	658	-	.	alignment_id 1 ; Query MSP, ; Align 2606 24 42 ; Align 2564 40 564
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis
