BLASTP 2.2.16 [Mar-25-2007]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= supercont1.1087:subseq(16000,5000) of Sphaeroforma arctica
JP610:[translate(1)]
         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
           16,352,912 sequences; 1,327,212,733 total letters

Searching... please wait.. done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_642828.2| membrane selenoprotein [Dictyostelium discoideu...    72   2e-14
ref|XP_003284027.1| hypothetical protein DICPUDRAFT_52650 [Dicty...    67   9e-13
ref|XP_002947604.1| membrane selenoprotein [Volvox carteri f. na...    63   9e-11
gb|EGG17044.1| membrane selenoprotein [Dictyostelium fasciculatum]     59   9e-10
gb|EFA83018.1| membrane selenoprotein [Polysphondylium pallidum ...    59   2e-09
ref|XP_002508818.1| predicted protein [Micromonas sp. RCC299] >g...    53   1e-07
ref|XP_003060097.1| predicted protein [Micromonas pusilla CCMP15...    48   2e-05
ref|XP_002773820.1| hypothetical protein Pmar_PMAR011664 [Perkin...    48   2e-05
ref|XP_002775829.1| conserved hypothetical protein [Perkinsus ma...    45   3e-04
ref|XP_001415402.1| predicted protein [Ostreococcus lucimarinus ...    42   0.001
ref|XP_002768511.1| hypothetical protein Pmar_PMAR022894 [Perkin...    39   0.025
ref|YP_004624077.1| putative monovalent cation/H+ antiporter sub...    36   0.16 
ref|YP_089006.1| CcmF protein [Mannheimia succiniciproducens MBE...    35   1.0  
ref|YP_003134168.1| putative acyltransferase [Saccharomonospora ...    35   1.4  
ref|YP_569761.1| integral membrane protein TerC [Rhodopseudomona...    34   1.7  
ref|YP_002418799.1| cytochrome c oxidase subunit III [Nezara vir...    34   1.8  

>ref|XP_642828.2| membrane selenoprotein [Dictyostelium discoideum AX4]
 sp|Q86KP5|MSP_DICDI RecName: Full=Membrane selenoprotein
 gb|EAL69009.2| membrane selenoprotein [Dictyostelium discoideum AX4]
          Length = 243

 Score = 72.4 bits (176), Expect = 2e-14
 Identities = 38/89 (42%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGF 60
           H  +FGPFYLT +AVPL   D+ RHIL D+   ++    S  A            + V  
Sbjct: 142 HWIKFGPFYLTAIAVPLATFDILRHILVDNSIWTIHSFISPAAYRPGCENENITCLSVMG 201

Query: 61  WFT-IVFTYSGFALLVVGTVWASNVVPKV 88
           WF+ IVFTY+G+A L+VGT+WA++++PK+
Sbjct: 202 WFSAIVFTYTGYACLLVGTIWAADLIPKI 230


>ref|XP_003284027.1| hypothetical protein DICPUDRAFT_52650 [Dictyostelium purpureum]
 gb|EGC39469.1| hypothetical protein DICPUDRAFT_52650 [Dictyostelium purpureum]
          Length = 201

 Score = 67.4 bits (163), Expect = 9e-13
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 1/89 (1%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGF 60
           H +++GPFYLTL+AVPL   D+ RHIL D+   +V    S  A            + V  
Sbjct: 101 HWHKYGPFYLTLLAVPLATFDILRHILVDNQLWTVHSFVSPAAYRPGCTHENIRCLSVMG 160

Query: 61  WFT-IVFTYSGFALLVVGTVWASNVVPKV 88
           WF+ I+FTY+G+ALL+ GT+W + +  K+
Sbjct: 161 WFSAIIFTYTGYALLLTGTIWCAELHIKI 189


>ref|XP_002947604.1| membrane selenoprotein [Volvox carteri f. nagariensis]
 gb|EFJ51137.1| membrane selenoprotein [Volvox carteri f. nagariensis]
          Length = 244

 Score = 62.8 bits (151), Expect = 9e-11
 Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVID--MDSTNALAVADLILLFVSIQV 58
           H  R+GP +L ++A PL+ ADL RH LQDS   +     M   +   V+     +     
Sbjct: 146 HWQRYGPAWLLVIATPLMCADLVRHCLQDSAIWTGPSSRMYRPHCGPVSGFHGFWCLSVT 205

Query: 59  GFWFTIVFTYSGFALLVVGTVWASNVVPKV 88
           G+ F+I+FTYSGF L+V   +W+SN++ K+
Sbjct: 206 GWLFSIIFTYSGFVLMVAAVLWSSNLIGKL 235


>gb|EGG17044.1| membrane selenoprotein [Dictyostelium fasciculatum]
          Length = 188

 Score = 59.3 bits (142), Expect = 9e-10
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGF 60
           H ++FGPFYLT +A PL   D+ RHIL D+   +     S  A            +    
Sbjct: 21  HWHKFGPFYLTAIAAPLATIDILRHILVDNGLWTPQAHWSPVAYRPGCTSATIKCLTPTG 80

Query: 61  WFTIVF-TYSGFALLVVGTVWASNVVPKV 88
           WF ++F TY+G+ LL++GTVW +++  K+
Sbjct: 81  WFFVIFCTYTGYILLMIGTVWCADLHTKI 109


>gb|EFA83018.1| membrane selenoprotein [Polysphondylium pallidum PN500]
          Length = 195

 Score = 58.5 bits (140), Expect = 2e-09
 Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGF 60
           H  +FGPFYLT +AVP    D+ RHIL D+   +     S  A            +    
Sbjct: 96  HWYKFGPFYLTAVAVPFATVDILRHILVDNGLWTTKSRWSPAAYRPGCNSESMKCLSATG 155

Query: 61  WFTIVF-TYSGFALLVVGTVWASNVVPKV 88
           WF +VF TY G+ LL+VGT+W +++  K+
Sbjct: 156 WFFVVFCTYFGYILLMVGTIWCADLHLKI 184


>ref|XP_002508818.1| predicted protein [Micromonas sp. RCC299]
 gb|ACO70076.1| predicted protein [Micromonas sp. RCC299]
          Length = 144

 Score = 53.1 bits (126), Expect = 1e-07
 Identities = 35/87 (40%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 3   NRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGFWF 62
           N+ GPF LTL +VPLVM DLTRH+LQD                 AD+  L      G   
Sbjct: 50  NKRGPFLLTLASVPLVMLDLTRHVLQDGGAWIEGSRMYRPGCGHADVRCL-----SGIGA 104

Query: 63  T-IVFTYSGFALLVVGTVWASNVVPKV 88
           T ++ TY GFA L+ G +W+++V  K+
Sbjct: 105 TCLLATYVGFACLISGVLWSADVTRKL 131


>ref|XP_003060097.1| predicted protein [Micromonas pusilla CCMP1545]
 gb|EEH56049.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 212

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 35/82 (42%), Positives = 43/82 (52%), Gaps = 5/82 (6%)

Query: 4   RFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGFWFT 63
           R GP  L   ++PLVM DLTRH+LQD    S + M      A AD+  L V   VG    
Sbjct: 122 RRGPIALAAASIPLVMLDLTRHVLQDGGVISDVGMYRAGC-AHADVRCLSV---VGA-AC 176

Query: 64  IVFTYSGFALLVVGTVWASNVV 85
              TY GFA L+ GT+W +  V
Sbjct: 177 ATATYLGFACLLAGTLWDAGAV 198


>ref|XP_002773820.1| hypothetical protein Pmar_PMAR011664 [Perkinsus marinus ATCC 50983]
 gb|EER05636.1| hypothetical protein Pmar_PMAR011664 [Perkinsus marinus ATCC 50983]
          Length = 214

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 39/127 (30%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDS-------------------- 40
           H+ ++GPFY  L+A   VM DLTRH+L DS    + D+ +                    
Sbjct: 68  HVRKWGPFYCVLIATIGVMMDLTRHVLIDSNNWFMTDVANGDRVKFNFDGCKYRIERVEG 127

Query: 41  ---------TNALAVADLILLFVSIQV----------GFWFTIVFTYSGFALLVVGTVWA 81
                       L V +   L VS  +          G WFT+V T++GF ++ +G +W 
Sbjct: 128 TPGECADIGRGPLQVTEENALGVSAPMYNPDGSYSFYGIWFTLVATWTGFLMMFIGILWY 187

Query: 82  SNVVPKV 88
           +++  K+
Sbjct: 188 TDLPHKL 194


>ref|XP_002775829.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gb|EER07645.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 385

 Score = 45.1 bits (105), Expect = 3e-04
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 39/119 (32%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDS-------------------- 40
           H+ ++GPFY  ++A   VMADLTRH+L DS    + D  +                    
Sbjct: 25  HLRKWGPFYCVVLATVGVMADLTRHVLLDSNNWFMTDSKTGKVVKFHFNDCSYEVEKVNG 84

Query: 41  -TNALAVADLILLFVSIQ------------------VGFWFTIVFTYSGFALLVVGTVW 80
            T++     L  L+V+ +                   G W T+  T++GF L+ VG  W
Sbjct: 85  ITDSCPDVGLGPLYVTEENALGVDVPMYNPDGSYSVYGIWLTLFATWAGFILMFVGIAW 143


>ref|XP_001415402.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gb|ABO93694.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 121

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 5   FGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGFWFTI 64
           +GP   T  +V L+ AD  RH+LQD    +             D+  L V   VG W  +
Sbjct: 25  YGPTATTAASVALLCADPMRHVLQDHELWTTNSAMYRPGCEHGDIRCLSV---VG-WVFL 80

Query: 65  VFTYSGFALLVVGTVWASNVVPKV 88
             TY GFA L+VG +W ++ + K+
Sbjct: 81  TCTYLGFACLIVGALWNADALGKL 104


>ref|XP_002768511.1| hypothetical protein Pmar_PMAR022894 [Perkinsus marinus ATCC
          50983]
 gb|EER01229.1| hypothetical protein Pmar_PMAR022894 [Perkinsus marinus ATCC
          50983]
          Length = 187

 Score = 39.3 bits (90), Expect = 0.025
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 1  HMNRFGPFYLTLMAVPLVMADLTRHILQDS 30
          H+ ++GPFY+ L+A   VM DL RH+L D+
Sbjct: 26 HLRKWGPFYMILVATVAVMMDLLRHVLMDA 55


>ref|YP_004624077.1| putative monovalent cation/H+ antiporter subunit F [Pyrococcus
          yayanosii CH1]
 gb|AEH24805.1| putative monovalent cation/H+ antiporter subunit F [Pyrococcus
          yayanosii CH1]
          Length = 84

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 8  FYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGFWFTIVFT 67
          FY TLM     +  + R IL  SV   V+ +D+ N L VA +ILL  +     +  I   
Sbjct: 4  FYATLMVGVAALLAVARLILGPSVPDRVVALDTLNTLVVAAMILLGAAYSRTIYIDIAIV 63

Query: 68 YSGFALLVVGTV 79
          Y+   L  +GT+
Sbjct: 64 YA--LLSYIGTL 73


>ref|YP_089006.1| CcmF protein [Mannheimia succiniciproducens MBEL55E]
 gb|AAU38421.1| CcmF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 644

 Score = 35.0 bits (79), Expect = 1.0
 Identities = 21/76 (27%), Positives = 41/76 (53%)

Query: 9   YLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGFWFTIVFTY 68
           +  L A+ L +  L  ++ Q +VR SV   +S   LA   L +  VS+ +G ++ +VF+ 
Sbjct: 318 FFLLTALALTVFALKVNLRQSAVRFSVFSKESFLLLANVVLTIATVSVFLGTFYPMVFSA 377

Query: 69  SGFALLVVGTVWASNV 84
            G+  + VG  + +++
Sbjct: 378 MGWGSISVGAPYFNSI 393


>ref|YP_003134168.1| putative acyltransferase [Saccharomonospora viridis DSM 43017]
 gb|ACU97341.1| predicted acyltransferase [Saccharomonospora viridis DSM 43017]
          Length = 690

 Score = 34.7 bits (78), Expect = 1.4
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)

Query: 12  LMAVPLVMADLTRHILQDSVRHSVIDMDST-NALAVADLILLFVSIQVGFWFTIVFTYSG 70
           ++A  LV+A +T H++++ VRHS I + +   A   A L+L+ V +  G W  I    S 
Sbjct: 343 VIAASLVLAAITYHLIENPVRHSNIGVTTRWGAYRFAVLVLVPVLVAAGVWQHITEQRSS 402

Query: 71  F 71
           F
Sbjct: 403 F 403


>ref|YP_569761.1| integral membrane protein TerC [Rhodopseudomonas palustris BisB5]
 gb|ABE39860.1| Integral membrane protein TerC [Rhodopseudomonas palustris BisB5]
          Length = 240

 Score = 34.3 bits (77), Expect = 1.7
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 10  LTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQV-GFWFTIVFTY 68
           + +M   +++A L  ++    V   V +  +T  LA+A L+L+ V++   GF F I   Y
Sbjct: 155 IEIMVAAVLIAMLIMYVSSGPVARFVSEHPTTKMLALAFLVLIGVALVADGFAFHIPRGY 214

Query: 69  SGFALLVVGTVWASNVVPK 87
             FA+L  G V   NV+ K
Sbjct: 215 IYFAILFSGAVEFFNVLAK 233


>ref|YP_002418799.1| cytochrome c oxidase subunit III [Nezara viridula]
 gb|ABM63310.1| cytochrome c oxidase subunit III [Nezara viridula]
          Length = 262

 Score = 34.3 bits (77), Expect = 1.8
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 5/83 (6%)

Query: 1   HMNRFGPFYLTLMAVPLVMADLTRHILQDSVRHSVIDMDSTNALAVADLILLFVSIQVGF 60
           H N    F+L +M + L M    R I+++S  HS   +  TN L +   ++LF+  +V F
Sbjct: 37  HKNEMYLFFLGIMILLLTMIQWWRDIIRESTFHSHHTIKVTNGLKIG--MILFIISEVFF 94

Query: 61  WFTIV--FTYSGFA-LLVVGTVW 80
           + +    F +S  A  + +G +W
Sbjct: 95  FISFFWGFFHSSLAPTIEIGMMW 117


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF excluding environmental samples
  from WGS projects
    Posted date:  Nov 28, 2011  1:35 PM
  Number of letters in database: 1,327,212,733
  Number of sequences in database:  16,352,912
  
Lambda     K      H
   0.332    0.141 5.30e-313 

Gapped
Lambda     K      H
   0.267   0.0410 5.30e-313 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 16352912
Number of Hits to DB: 86984850
Number of extensions: 2595624
Number of successful extensions: 10100
Number of sequences better than 10: 1
Number of HSP's better than 10 without gapping: 0
Number of HSP's gapped: 10170
Number of HSP's successfully gapped: 1
Length of query: 88
Length of database: 5622180029
Length adjustment: 58
Effective length of query: 30
Effective length of database: 4673711133
Effective search space: 140211333990
Effective search space used: 140211333990
T: 11
A: 40
X1: 15 (7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.0 bits)
S2: 76 (33.9 bits)

