T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=83
*
 BAD AVG GOOD
*
PHYCAscaffold_1   :  83
eEFsec.Human.SP   :  83
cons              :  83

PHYCAscaffold_1   -----LNVNVGVLGHVDSGKTSLVRALSTQLSTAALDKHPQSQQR
eEFsec.Human.SP   MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRER

cons                   :*********:*****:*.*****  ****:**:***::*


PHYCAscaffold_1   GITLDLGFSSFLLKPSAQV------------------KPCLQVTL
eEFsec.Human.SP   GITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEPGEPLLQVTL

cons              *********.* :  .*::                  :* *****


PHYCAscaffold_1   VDCPGHASLFRTILGGVAIIDTVLLVIDCRKGLQAQTIESLLLAT
eEFsec.Human.SP   VDCPGHASLIRTIIGGAQIIDLMMLVIDVTKGMQTQSAECLVIGQ

cons              *********:***:**. *** ::****  **:*:*: *.*::. 


PHYCAscaffold_1   LIAKRSVVVALTKTDLVPSAERDNVIGKCSHEVRSFMATNFNFHD
eEFsec.Human.SP   -IACQKLVVVLNKIDLLPEGKRQAAIDKMTKKMQKTL-ENTKFRG

cons               ** :.:**.*.* **:*..:*: .*.* :::::. :  * :*:.


PHYCAscaffold_1   TSSIPVVPVAVG----SNQDPQGIPQLLEALNANLQVPERDHSGS
eEFsec.Human.SP   APIIPVAAKPGGPEAPETEAPQGIPELIELLTSQISIPTRDPSGP

cons              :. ***.. . *    ..: *****:*:* *.:::.:* ** **.


PHYCAscaffold_1   FCLAVDHCFSVPGNGTILTGTVLSGALERGDELELLPLGAKVKVK
eEFsec.Human.SP   FLMSVDHCFSIKGQGTVMTGTILSGSISLGDSVEIPALKVVKKVK

cons              * ::******: *:**::***:***::. **.:*: .* .  ***


PHYCAscaffold_1   TLQVFKKDVAKCSQGDRVGLRVNGLDPALVERALAVSPPGSLTPV
eEFsec.Human.SP   SMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCA-PESLHTV

cons              ::*:*:  ::.. ****:*: *. :** *:**.*. : * ** .*


PHYCAscaffold_1   TQVVIPVTKVPFFHEISCKSGGKCHVTVGHTTIIAMATFFT----
eEFsec.Human.SP   HAALISVEKIPYFRG-PLQTKAKFHITVGHETVMGRLMFFSPAPD

cons                .:*.* *:*:*:  . :: .* *:**** *::.   **:    


PHYCAscaffold_1   ---------------------------------------------
eEFsec.Human.SP   NFDQEPILDSFNFSQEYLFQEQYLSKDLTPAVTDNDEADKKAGQA

cons                                                           


PHYCAscaffold_1   ------------------------CLVCPASIRAG----------
eEFsec.Human.SP   TEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDADIHTNTCRLAF

cons                                      ***  : : *.          


PHYCAscaffold_1   ---------------------------------------------
eEFsec.Human.SP   HGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVERAMDDYSVIGR

cons                                                           


PHYCAscaffold_1   ------------------------------------------GFL
eEFsec.Human.SP   SLFKKETNIQLFVGLKVHLSTGELGIIDSAFGQSGKFKIHIPGGL

cons                                                        * *


PHYCAscaffold_1   SSKDACGVFTNGS----------------------RRQALPVSIG
eEFsec.Human.SP   S-PESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVVLSLT

cons              *  ::  ::* .                         * : :*: 


PHYCAscaffold_1   FLWSYF-VEFDLEPCM
eEFsec.Human.SP   FKRYVFDTHKRMVQSP

cons              *    * ..  :  .