T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=99
*
 BAD AVG GOOD
*
PHYCAscaffold_5   :  99
OPtRNAsecSTHuma   :  99
cons              :  99

PHYCAscaffold_5   MNSKSAALAEQLIPSTYVKQGLGAIRSREALVTTLLAQRRLPDEG
OPtRNAsecSTHuma   MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENG

cons              ** :* * .*:*:..:**:**  * **:* *:  ** : : *::*


PHYCAscaffold_5   WDDASVEMLLQTLSAMDSNNFQGSAGAGEREARVFSPMVARRHFR
OPtRNAsecSTHuma   WDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR

cons              **::::*::*: *: ****** *..*.****.** *.:*****:*


PHYCAscaffold_5   LAHGVGRSGDVAAVQPKAAGSSLLVQLANSLAKDVLRLAGMRAVQ
OPtRNAsecSTHuma   FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVA

cons              : **:*****::************ :::***. *:::***:::* 


PHYCAscaffold_5   AALVLPVATGMSLTLVLLQLNELKPGAHYVIWPRIDQKSCFKSIL
OPtRNAsecSTHuma   NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI

cons               .:*:*:******** :* *.. :* *:*:*************::


PHYCAscaffold_5   AAGLTPLVLPNVLVEEEGGYLKTDLAGMAELIDQYGADSILAVMS
OPtRNAsecSTHuma   TAGFEPVVIENVL---EGDELRTDLKAVEAKVQELGPDCILCIHS

cons              :**: *:*: ***   **. *:*** .:   ::: *.*.**.: *


PHYCAscaffold_5   TTSCFAPRAYDSVQEIAKMCQDRNIAHVINNAYGVQASKCVHEVE
OPtRNAsecSTHuma   TTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQ

cons              ********. * ::*:* :* : :*.*::*******:***:* ::


PHYCAscaffold_5   LAMRVGRVDAVVQSLDKNFMVPVGGAIVCSASRDLVDRVAKFYPG
OPtRNAsecSTHuma   QGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPG

cons               . ****:**.****************:.. . .:::.::*:***


PHYCAscaffold_5   RASATPTLDFFITMLQM----------------------------
OPtRNAsecSTHuma   RASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSE

cons              ****:*:**.:**:*.:                            


PHYCAscaffold_5   ---------------------------------------------
OPtRNAsecSTHuma   AYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSG

cons                                                           


PHYCAscaffold_5   ---------------------------------------------
OPtRNAsecSTHuma   ARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDV

cons                                                           


PHYCAscaffold_5   ---------------------------------------------
OPtRNAsecSTHuma   DLFIKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVL

cons                                                           


PHYCAscaffold_5   ------VSS
OPtRNAsecSTHuma   LDTYQDASS

cons                    .**