T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame
CPU TIME:0 sec.
SCORE=98
*
BAD AVG GOOD
*
Lt_contig6577_s : 98
OPtRNAsecSTHuma : 98
cons : 98
Lt_contig6577_s MDDRSLKLAEDFVPARYIDAGGESLRSTARILRCILAQRRCPDEA
OPtRNAsecSTHuma MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKGKCPENG
cons *: .*: .* :*.. *: * *: ** :::* :* : :**::.
Lt_contig6577_s LTDAAIELILRQLSLMDTNNFAHHVGGGEREGRVVSALVRMRHFH
OPtRNAsecSTHuma WDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYR
cons ::::**:*::*::**:*** : * *******.**** **::
Lt_contig6577_s LTHGIGRSGDLFSEQPKAAGSSLLYKITNVLMLDLLRQAGAPSTA
OPtRNAsecSTHuma FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVA
cons : ********: : ********** **** *:**::: **. :.*
Lt_contig6577_s AAVVVPMSTGMTLALVLRCVAKSRTEERYVIWPRIDQKTALKCID
OPtRNAsecSTHuma NCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMI
cons ..****:***:*:* : : :.*.: :*:********:.:*.:
Lt_contig6577_s AAGLIPVPVQLRPAVTLARSADPWVSANRDSLGRDKVVCVLSTTS
OPtRNAsecSTHuma TAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTS
cons :**: ** :: *: *.*: :.** * ::*: ****
Lt_contig6577_s CFAPRLPDNTVGIAQYCKEAGIPYVVNNAYGVQSRRIMTRLDAAQ
OPtRNAsecSTHuma CFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGA
cons *****:**. :* * : .**::********* : * :: .
Lt_contig6577_s RLGRVDFVVQSGDKNFLVPVGGSIISSSDKARCQAVAALYAGRAS
OPtRNAsecSTHuma RVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRAS
cons *:**:* .*** ****:*****:**:. :.: * :: :*.****
Lt_contig6577_s MSPIVDLFITALSLGRRGMQALWSDRYRCRARLIRQLREFARERR
OPtRNAsecSTHuma ASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYN
cons ** :*::** **** .* : * .:* . : * .*:::::. .
Lt_contig6577_s EVL------------------------------------------
OPtRNAsecSTHuma ERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV
cons * *
Lt_contig6577_s ---------------------------------------------
OPtRNAsecSTHuma VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLF
cons
Lt_contig6577_s ---------------------------------------------
OPtRNAsecSTHuma IKRLDRCLKAVRKERSKESDDNYDKTEDVDIEEMALKLDNVLLDT
cons
Lt_contig6577_s -----L
OPtRNAsecSTHuma YQDASS
cons