genewise output
Score 108.18 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SelTryp;           4 RFVRISFSLALLIAAFLAANAGSATNADNEATDYSSHRYKYLEMLKEAD 
                     R +R+++ +A L+AA+L A A  A   D      S   Y YL+ML E+D 
                     RSLRVALVVAALLAAILLACATYAAAQD------SHDPYAYLDMLDESD 
Cf_Contig896:su 8790 ctccggcggggccggaccgtgatgggcg      acgctgtcgacggag 
                     gctgtctttccttcctttcgccacccaa      gaacacatattaaga 
                     cggacgggggggggtcgcccggccttgc      cccccccccgccgct 


SelTryp;          53 LKQMLHEK--GEA-FHHLRSKRELILAVLKLEKREEALR           
                     LK+ML++K  G+A     R K +L+ AV +LE+ EE  R           
                     LKKMLYDKTRGQAQLDAFRRKADLVAAVRQLEEMEEK!R           
Cf_Contig896:su 8919 caaactgaacgcgccggtccaggcggggcccggagga4c           
                     taattaaacggacatactggacattcctgataataaa g           
                     cgggcccggcggggctccccgccccgggggggggaga c           


SelTryp;          89                           ARVTDTVQHEVRVEYCSGUGYRR 
                                                      +H++ V YC+G GY + 
                               K:R[agg]        RAGRAAAKHKLEVLYCTGXGYAK 
Cf_Contig896:su 9037 AGTTCGAT  Intron 1   CAGGGcggcgggacatggcttagtgtga 
                      <1-----[9038 : 9357]-1>  gcggcccaaatattagcgggaca 
                                               tcgttgggtaggggcctaaacgg 


SelTryp;         113 HYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGNILS 
                     +++E+ + L RSLP     Q+      +++VG  Y    +R  +    S 
                     YFDEMKQHLQRSLP---NAQE------VRIVGGTYPTPPLRAAVAKACS 
Cf_Contig896:su 9429 ttggaaccccctcc   agcg      gcagggatcaccccggggagtt 
                     ataataaatagctc   acaa      tgttggcacccctgcctcacgc 
                     cccggggcgggtgc   cggg      gtccccccgagcccccccggcc 


SelTryp;         162 TGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVASSL 
                       F+ ++ +++  P L G LPP +  ++ Q RGMV+GAGF++N+V +SL 
                     FSFMGALGLALAGPQL-GILPPVVVNFLNQQRGMVIGAGFLLNIVGNSL 
Cf_Contig896:su 9549 tttaggcgcgcggccc gacccgggatcacccgagagggtccaaggatc 
                     tcttgctgtctcgcat gttcctttattaaaggtttgcgtttattgact 
                     ctcgtgggccgacggg ccgttctgctgcggggggtgtccgcccccctc 


SelTryp;         211 LQSGAFEVYLNGSLIYSKLETGAVP                         
                     +Q+GAFEV L+G+LI+SKL+TG+VP                         
                     VQTGAFEVSLDGALIFSKLQTGSVP                         
Cf_Contig896:su 9693 gcaggtggtcgggcattaccagtgc                         
                     tacgctatctagctttcatacgctc                         
                     cgtcctggggttggccggggcctgt                         


//
Making a R in phase 1 intron
>Cf_Contig896:subseq(0,20000).pep
RSLRVALVVAALLAAILLACATYAAAQDSHDPYAYLDMLDESDLKKMLYDKTRGQAQLDA
FRRKADLVAAVRQLEEMEEKXRRRAGRAAAKHKLEVLYCTGXGYAKYFDEMKQHLQRSLP
NAQEVRIVGGTYPTPPLRAAVAKACSFSFMGALGLALAGPQLGILPPVVVNFLNQQRGMV
IGAGFLLNIVGNSLVQTGAFEVSLDGALIFSKLQTGSVP
//
>Cf_Contig896:subseq(0,20000).[8790:9029].sp
CGCTCGCTGCGAGTCGCGCTGGTGGTGGCGGCGCTGCTGGCGGCTATCCTGCTCGCCTGC
GCGACGTACGCCGCTGCTCAGGACAGCCACGACCCCTACGCCTACCTCGACATGCTCGAC
GAGAGCGATCTCAAGAAGATGCTCTACGACAAGACGCGCGGGCAGGCGCAGCTCGATGCC
TTCCGCCGCAAGGCCGACCTCGTCGCGGCGGTGCGGCAGCTGGAGGAGATGGAAGAGAAA
>Cf_Contig896:subseq(0,20000).[9034:9767].sp
CGCAGGCGTGCCGGGCGTGCTGCGGCGAAGCATAAATTGGAGGTGCTGTACTGCACTGGA
TGAGGATACGCGAAGTACTTCGACGAGATGAAGCAGCACCTGCAGCGGTCTCTGCCCAAC
GCGCAGGAGGTGCGTATCGTCGGCGGCACCTACCCGACACCGCCCCTCCGCGCCGCCGTC
GCCAAGGCGTGCTCCTTCTCTTTCATGGGTGCGCTGGGGCTCGCCCTGGCAGGCCCGCAG
CTGGGCATCCTGCCTCCTGTCGTTGTGAACTTTCTGAACCAGCAGCGGGGGATGGTGATT
GGGGCTGGCTTCCTGCTCAACATCGTCGGCAACTCTCTCGTCCAGACTGGCGCCTTTGAG
GTGTCGCTGGATGGTGCGCTGATCTTCTCGAAGCTGCAGACCGGCTCTGTGCCT
//
Cf_Contig896:subseq(0,20000)	GeneWise	match	8790	9029	34.18	+	.	Cf_Contig896:subseq(0,20000)-genewise-prediction-1
Cf_Contig896:subseq(0,20000)	GeneWise	cds	8790	9029	0.00	+	0	Cf_Contig896:subseq(0,20000)-genewise-prediction-1
Cf_Contig896:subseq(0,20000)	GeneWise	match	9034	9767	86.99	+	.	Cf_Contig896:subseq(0,20000)-genewise-prediction-2
Cf_Contig896:subseq(0,20000)	GeneWise	cds	9034	9037	0.00	+	0	Cf_Contig896:subseq(0,20000)-genewise-prediction-2
Cf_Contig896:subseq(0,20000)	GeneWise	intron	9038	9357	0.00	+	.	Cf_Contig896:subseq(0,20000)-genewise-prediction-2
Cf_Contig896:subseq(0,20000)	GeneWise	cds	9358	9767	0.00	+	2	Cf_Contig896:subseq(0,20000)-genewise-prediction-2
//