genewise output
Score 108.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SelTryp;          42 YKYLEMLKEADLKQMLHEK--GEA-FHHLRSKRELILAVLKLEKR--EE 
                     Y YL+ML E DL+QML+EK  G+      R K+EL+ AV KLE+R  EE 
                     YAYLDMLDEVDLQQMLYEKTHGQVPVSAFRDKKELVAAVRKLEEREDEE 
contig_35:subse11903 tgtcgacggggcccactgaacgcgcgagtcgaagcggggcacggcgggg 
                     acatattaatataattaaacagatctgctgaaaattcctgataagaaaa 
                     cccccggtggcagagataggtggggcctcccggggtcagcgcggcgcgg 


SelTryp;          86 ALRKARVTDTVQHEVRVEYCSGU                           
                     A   ARV   +Q +  +                                 
                     ASFNARVMAAMQRKAALMQ-QNN          G:G[gga]         
contig_35:subse12050 gatagcgaggaccaggcac caaGGTGCAGA  Intron 1   GAGGA 
                     cgtacgttcctagacctta aaa <1-----[12117:12428]-1>   
                     ccccgtggggggcgccggg gcc                           


SelTryp;         110 YRRHYEEVAESLLRSLPPELREQQKGKKPFIKFVGVVYSVGAFREFIGN 
                     Y +++E++ + L R+LP     Q+      +++VG  Y     R +    
                     YAKYFEDMKQQLQRTLP---NAQE------VRIVGGTYPTPPARALAAK 
contig_35:subse12431 tgattggaacccccacc   agcg      gcagggatcaccgcgcgga 
                     acaataataaatagctc   acaa      tgttggcacccccgctcca 
                     cggttatgggggatggc   caag      actgctccccatcccccgg 


SelTryp;         159 ILSTGFLASIAISFFAPFLRGALPPHIAEWIEQHRGMVVGAGFMMNMVA 
                       ST FLAS+ +++    L   LPP +  +I Q RGM++GAGF++NMV  
                     ACSTAFLASLGVALAGQQLV-FLPPTVLNFIAQQRGMLIGAGFLLNMVG 
contig_35:subse12551 gttagtcgtcgggcggcccg tcccagcatagcccgatagggttcaagg 
                     cgcccttcctgtctcgaatt ttcccttattcaaggtttgcgtttattg 
                     gcgcctgccctcctaagacg tgccctgccctggccggccttcgctgcc 


SelTryp;         208 SSLLQSGAFEVYLNGSLIYSKLETGAVPTAETLADHILRQII        
                      +L Q+GAFEV L+G LI+SKL+ GAVPT   +   +L++ +        
                     GALGQTGAFEVSLDGELIFSKLQAGAVPTVAEIRRIVLQKTL        
contig_35:subse12695 ggcgcaggtggatgggcattaccggggcagggaccagccaac        
                     gctgacgctatgtagatttcatacgctcctcatggtttaact        
                     cccggctccggcgccatccaaggtgtagcggaatttcggggg        


//
Making a G in phase 1 intron
>contig_35:subseq(483083,20000).pep
YAYLDMLDEVDLQQMLYEKTHGQVPVSAFRDKKELVAAVRKLEEREDEEASFNARVMAAM
QRKAALMQQNNGYAKYFEDMKQQLQRTLPNAQEVRIVGGTYPTPPARALAAKACSTAFLA
SLGVALAGQQLVFLPPTVLNFIAQQRGMLIGAGFLLNMVGGALGQTGAFEVSLDGELIFS
KLQAGAVPTVAEIRRIVLQKTL
//
>contig_35:subseq(483083,20000).[11903:12820].sp
TACGCCTACCTCGACATGCTGGATGAGGTGGACCTACAGCAAATGCTATATGAAAAGACG
CATGGGCAGGTGCCGGTCAGCGCTTTCCGCGACAAGAAGGAGCTGGTTGCCGCAGTGCGC
AAGCTCGAGGAGCGCGAGGACGAGGAGGCCAGCTTCAACGCGCGTGTGATGGCGGCGATG
CAGCGCAAGGCCGCCCTGATGCAGCAGAACAACGGATACGCGAAGTATTTTGAAGATATG
AAGCAGCAGCTGCAACGTACGCTGCCCAACGCACAAGAGGTACGCATTGTGGGCGGTACC
TACCCCACCCCACCTGCCCGCGCCCTCGCCGCGAAGGCGTGCTCGACCGCCTTTCTGGCC
TCCCTCGGTGTCGCCCTTGCAGGACAGCAACTCGTGTTTCTGCCCCCCACCGTTCTGAAC
TTCATCGCTCAGCAGCGCGGCATGTTGATCGGCGCTGGTTTCTTGCTCAATATGGTCGGC
GGCGCCCTCGGGCAGACCGGTGCCTTCGAGGTGAGCTTGGACGGCGAACTTATCTTCTCA
AAACTGCAGGCTGGGGCTGTACCGACCGTGGCGGAAATACGTCGTATTGTCCTGCAGAAG
ACGCTG
//
contig_35:subseq(483083,20000)	GeneWise	match	11903	12820	117.67	+	.	contig_35:subseq(483083,20000)-genewise-prediction-1
contig_35:subseq(483083,20000)	GeneWise	cds	11903	12116	0.00	+	0	contig_35:subseq(483083,20000)-genewise-prediction-1
contig_35:subseq(483083,20000)	GeneWise	intron	12117	12428	0.00	+	.	contig_35:subseq(483083,20000)-genewise-prediction-1
contig_35:subseq(483083,20000)	GeneWise	cds	12429	12820	0.00	+	2	contig_35:subseq(483083,20000)-genewise-prediction-1
//