
genewise output
Score 91.00 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000059_1.0   29 EWKSVLPNEVYRVARESGTETPHTGGFNDHFEK---GRYVC         
                     EWKS L  + Y V R  GTE P TG +N  + K   G + C         
                     EWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFAC         
supercont1.1467 1057 gtaatctgcgtggaaaagaggcgaggtaactcaggggctgt         
                     agagctccaaaattgaagcaccgcgaaaatacacaagatcg         
                     aggcgctagattcagcacagggaagattgcttgtcgccctc         


SPP00000059_1.0   67                           CCGSELFNSDAKFWAGCGWPAFS 
                                                C + ++++ AKF +GCGWPAF  
                                L:R[aga]       ACKNPIYSATAKFDSGCGWPAFD 
supercont1.1467 1180 AGGTGAGGT  Intron 1   TAGAgtaacattgagatgagtgtcgtg 
                       <2-----[1182 : 1782]-2> cgaactaccccatagggggccta 
                                               tcgtcccatgggtctgtagttcc 


SPP00000059_1.0   91 ESVGQDANIVRIVDR                          HGMHRTEV 
                     +      +I   +D+                           G+ R E+ 
                     KCY--EGSITTEIDQ           S:T[acg]       MGLKRIEI 
supercont1.1467 1853 att  ggtaaagagcACGTAAGTT  Intron 2   CAGGagtacaga 
                     aga  agctccataa  <2-----[1894 : 2533]-2> tgtagtat 
                     gcc  gtacaagcca                          gtgatagt 


SPP00000059_1.0  115 RCKTCDAHLGHVFNDGPKETTGERYCINSVCMAFEK              
                      C  C  HLGHVF       T ER+C+NSV + F K              
                     MCSQCGGHLGHVFEGEKFTDTNERHCVNSVSIKFVK              
supercont1.1467 2559 atactggccgcgtgggatagaagcctgatgtaatga              
                     tggagggatgattagaatcacaagagtactctatta              
                     gctacgtcggtccacggcatccatctcccaacgtag              


//
Making a R in phase 2 intron
Making a T in phase 2 intron
>supercont1.1467:subseq(0,12538).pep
EWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFACRACKNPIYSATAKFDSGCG
WPAFDKCYEGSITTEIDQTMGLKRIEIMCSQCGGHLGHVFEGEKFTDTNERHCVNSVSIK
FVK
//
supercont1.1467:subseq(0,12538)	GeneWise	match	1057	2666	94.00	+	.	supercont1.1467:subseq(0,12538)-genewise-prediction-1
supercont1.1467:subseq(0,12538)	GeneWise	cds	1057	1181	0.00	+	0	supercont1.1467:subseq(0,12538)-genewise-prediction-1
supercont1.1467:subseq(0,12538)	GeneWise	intron	1182	1782	0.00	+	.	supercont1.1467:subseq(0,12538)-genewise-prediction-1
supercont1.1467:subseq(0,12538)	GeneWise	cds	1783	1893	0.00	+	1	supercont1.1467:subseq(0,12538)-genewise-prediction-1
supercont1.1467:subseq(0,12538)	GeneWise	intron	1894	2533	0.00	+	.	supercont1.1467:subseq(0,12538)-genewise-prediction-1
supercont1.1467:subseq(0,12538)	GeneWise	cds	2534	2666	0.00	+	1	supercont1.1467:subseq(0,12538)-genewise-prediction-1
//

genewise output
Score 16.76 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000059_1.0   28 TEWKSVLPNEVYRVARES                                
                     T WKS LP+   R  R++                                
                     TLWKSYLPSSQSRDKRQT                                
supercont1.1467-3786 actattccttcacgacca                                
                     ctgacatcccaggaagac                                
                     tggattgcggacgcgcag                                


//
>supercont1.1467:subseq(0,12538).pep
TLWKSYLPSSQSRDKRQT
//
supercont1.1467:subseq(0,12538)	GeneWise	match	3786	3733	16.76	-	.	supercont1.1467:subseq(0,12538)-genewise-prediction-1
supercont1.1467:subseq(0,12538)	GeneWise	cds	3786	3733	0.00	-	0	supercont1.1467:subseq(0,12538)-genewise-prediction-1
//
