
genewise output
Score 85.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000089_1.0   14 ELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEK---GVYQC         
                     E +  L+  +Y V +  GTE P TG YNK Y K   G + C         
                     EWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFAC         
supercont1.1467 1057 gtaatctgcgtggaaaagaggcgaggtaactcaggggctgt         
                     agagctccaaaattgaagcaccgcgaaaatacacaagatcg         
                     aggcgctagattcagcacagggaagattgcttgtcgccctc         


SPP00000089_1.0   52                           VCHQDLFSSETKYDSGCGWPAFN 
                                                C   ++S+  K+DSGCGWPAF  
                                I:R[aga]       ACKNPIYSATAKFDSGCGWPAF- 
supercont1.1467 1180 AGGTGAGGT  Intron 1   TAGAgtaacattgagatgagtgtcgt  
                       <2-----[1182 : 1782]-2> cgaactaccccatagggggcct  
                                               tcgtcccatgggtctgtagttc  


SPP00000089_1.0   76 DVLDKGKVTLHRDA                          IPGMVRTEV 
                     D   +G +T   D                           + G+ R E+ 
                     DKCYEGSITTEIDQ           S:T[acg]       M-GLKRIEI 
supercont1.1467 1850 gattggtaaagagcACGTAAGTT  Intron 2   CAGGa gtacaga 
                     aagaagctccataa  <2-----[1894 : 2533]-2> t gtagtat 
                     cgccgtacaagcca                          g tgatagt 


SPP00000089_1.0  100 RCSRCSAHMGHVFDDGP-PPKHRRFCINSASIDFVK              
                      CS+C  H+GHVF+       + R C+NS SI FVK              
                     MCSQCGGHLGHVFEGEKFTDTNERHCVNSVSIKFVK              
supercont1.1467 2559 atactggccgcgtgggatagaagcctgatgtaatga              
                     tggagggatgattagaatcacaagagtactctatta              
                     gctacgtcggtccacggcatccatctcccaacgtag              


//
Making a R in phase 2 intron
Making a T in phase 2 intron
>supercont1.1467:subseq(0,12547).pep
EWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFACRACKNPIYSATAKFDSGCG
WPAFDKCYEGSITTEIDQTMGLKRIEIMCSQCGGHLGHVFEGEKFTDTNERHCVNSVSIK
FVK
//
supercont1.1467:subseq(0,12547)	GeneWise	match	1057	2666	87.81	+	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	1057	1181	0.00	+	0	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	intron	1182	1782	0.00	+	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	1783	1893	0.00	+	1	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	intron	1894	2533	0.00	+	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	2534	2666	0.00	+	1	supercont1.1467:subseq(0,12547)-genewise-prediction-1
//

genewise output
Score 15.25 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000089_1.0  166 CINSASIEFV                                        
                     C+ S  +EFV                                        
                     CLKSCDVEFV                                        
supercont1.1467-1681 ttattgggtg                                        
                     gtacgatatt                                        
                     caactttata                                        


//
>supercont1.1467:subseq(0,12547).pep
CLKSCDVEFV
//
supercont1.1467:subseq(0,12547)	GeneWise	match	1681	1652	15.25	-	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	1681	1652	0.00	-	0	supercont1.1467:subseq(0,12547)-genewise-prediction-1
//
