
genewise output
Score 18.96 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000089_1.0  174 FVNADPATSSPPVATP                                  
                     F NAD AT  P  A+P                                  
                     FRNADDATRKPRTASP                                  
PHYCAscaffold_384112 taaggggaaacaagtc                                  
                     tgacaaccgacgcccc                                  
                     cacccccaggcaggac                                  


//
>PHYCAscaffold_33:subseq(168966,188966).pep
FRNADDATRKPRTASP
//
PHYCAscaffold_33:subseq(168966,188966)	GeneWise	match	84112	84159	18.96	+	.	PHYCAscaffold_33:subseq(168966,188966)-genewise-prediction-1
PHYCAscaffold_33:subseq(168966,188966)	GeneWise	cds	84112	84159	0.00	+	0	PHYCAscaffold_33:subseq(168966,188966)-genewise-prediction-1
//

genewise output
Score 99.47 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000089_1.0    1 MDNKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVY 
                     M + S+ V ++ EE ++RLTP+Q+QV +  GTER  TG YNKH E GVY 
                     MSSNSDAVKLSDEEWKQRLTPMQFQVLRLKGTERAGTGEYNKHKETGVY 
PHYCAscaffold_-10428 ataaagggactgggtacccacactcgcctagagcggaggtaacagaggt 
                     tcgagactatcaaagaagtcctatattgtagcagcgcgaaaaaaacgta 
                     ggctcccggcgtaggggtggcggcaggcggtgaacttagccgcggctgc 


SPP00000089_1.0   50 QCIVCHQDLFSSETKYDSGCGWPAFNDVL                     
                      C  C   +++S TK+DSGCGWPAF D +                     
                     VCAGCKTPVYTSTTKFDSGCGWPAFYDAI                     
PHYCAscaffold_-10281 gtggtaacgtataaatgtgtgtcgttgga                     
                     tgcggacctaccccatacggggcctaact                     
                     cttgcgttgcttcagctgctcgtctccct                     


//
>PHYCAscaffold_33:subseq(168966,188966).pep
MSSNSDAVKLSDEEWKQRLTPMQFQVLRLKGTERAGTGEYNKHKETGVYVCAGCKTPVYT
STTKFDSGCGWPAFYDAI
//
PHYCAscaffold_33:subseq(168966,188966)	GeneWise	match	10428	10195	99.47	-	.	PHYCAscaffold_33:subseq(168966,188966)-genewise-prediction-1
PHYCAscaffold_33:subseq(168966,188966)	GeneWise	cds	10428	10195	0.00	-	0	PHYCAscaffold_33:subseq(168966,188966)-genewise-prediction-1
//
