
genewise output
Score 96.25 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000077_1.0   40 DVKWNDALTPLQLMVLRDKATERPNTGAY--LHTN-ESGVYHC       
                     D +W  +L+  +  V+R+K TE P TG Y  L+     G + C       
                     DAEWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFAC       
supercont1.1467 1051 gggtaatctgcgtggaaaagaggcgaggtaactcaggggctgt       
                     acagagctccaaaattgaagcaccgcgaaaatacacaagatcg       
                     tgaggcgctagattcagcacagggaagattgcttgtcgccctc       


SPP00000077_1.0   80                           NCDRPLYSSKAKFDARCGWPAFY 
                                                C  P+YS+ AKFD+ CGWPAF  
                                A:R[aga]       ACKNPIYSATAKFDSGCGWPAF- 
supercont1.1467 1180 AGGTGAGGT  Intron 1   TAGAgtaacattgagatgagtgtcgt  
                       <2-----[1182 : 1782]-2> cgaactaccccatagggggcct  
                                               tcgtcccatgggtctgtagttc  


SPP00000077_1.0  104 EEVSPGAITYHRDN                          LMPARVEIC 
                      +   G+IT   D                           +   R+EI  
                     DKCYEGSITTEIDQ           S:T[acg]       MGLKRIEIM 
supercont1.1467 1850 gattggtaaagagcACGTAAGTT  Intron 2   CAGGagtacagaa 
                     aagaagctccataa  <2-----[1894 : 2533]-2> tgtagtatt 
                     cgccgtacaagcca                          gtgatagtg 


SPP00000077_1.0  128 CARCGGHLGHVFEGEGWKQLLNLPKDTRHCVNSASLNLKK          
                     C++CGGHLGHVFEGE +          RHCVNS S+   K          
                     CSQCGGHLGHVFEGEKFTDT-----NERHCVNSVSIKFVK          
supercont1.1467 2562 tactggccgcgtgggataga     agcctgatgtaatga          
                     ggagggatgattagaatcac     aagagtactctatta          
                     ctacgtcggtccacggcatc     catctcccaacgtag          


//
Making a R in phase 2 intron
Making a T in phase 2 intron
>supercont1.1467:subseq(0,12547).pep
DAEWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFACRACKNPIYSATAKFDSG
CGWPAFDKCYEGSITTEIDQTMGLKRIEIMCSQCGGHLGHVFEGEKFTDTNERHCVNSVS
IKFVK
//
supercont1.1467:subseq(0,12547)	GeneWise	match	1051	2666	101.24	+	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	1051	1181	0.00	+	0	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	intron	1182	1782	0.00	+	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	1783	1893	0.00	+	1	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	intron	1894	2533	0.00	+	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	2534	2666	0.00	+	1	supercont1.1467:subseq(0,12547)-genewise-prediction-1
//

genewise output
Score 17.83 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000077_1.0  133 GHLGHVFEGEGWK-QLLNLP                              
                     GHL   + G  WK  L NLP                              
                     GHLAIGYRGSIWKGKLANLP                              
supercont1.146-11251 gccgagtcgaatagacgatc                              
                     gatctgagggtgagatcatc                              
                     gtgttacagttgatgggtac                              


//
>supercont1.1467:subseq(0,12547).pep
GHLAIGYRGSIWKGKLANLP
//
supercont1.1467:subseq(0,12547)	GeneWise	match	11251	11192	17.83	-	.	supercont1.1467:subseq(0,12547)-genewise-prediction-1
supercont1.1467:subseq(0,12547)	GeneWise	cds	11251	11192	0.00	-	0	supercont1.1467:subseq(0,12547)-genewise-prediction-1
//
