
genewise output
Score 78.41 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000023_1.0   49 ELRKRLTPLQYHVTQEKGTESAFEGEYTH---HKDPGIYKC         
                     E +  L+  +Y V + KGTE+   GEY       D G + C         
                     EWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFAC         
supercont1.1467 1057 gtaatctgcgtggaaaagaggcgaggtaactcaggggctgt         
                     agagctccaaaattgaagcaccgcgaaaatacacaagatcg         
                     aggcgctagattcagcacagggaagattgcttgtcgccctc         


SPP00000023_1.0   87                           VCGTPLFKSETKFDSGSGWPSFH 
                                                C  P++ +  KFDSG GWP+F  
                                V:R[aga]       ACKNPIYSATAKFDSGCGWPAF- 
supercont1.1467 1180 AGGTGAGGT  Intron 1   TAGAgtaacattgagatgagtgtcgt  
                       <2-----[1182 : 1782]-2> cgaactaccccatagggggcct  
                                               tcgtcccatgggtctgtagttc  


SPP00000023_1.0  111 DVINSEAITFTDDF                          YGMHRVETS 
                     D     +IT   D                            G+ R+E   
                     DKCYEGSITTEIDQ           S:T[acg]       MGLKRIEIM 
supercont1.1467 1850 gattggtaaagagcACGTAAGTT  Intron 2   CAGGagtacagaa 
                     aagaagctccataa  <2-----[1894 : 2533]-2> tgtagtatt 
                     cgccgtacaagcca                          gtgatagtg 


SPP00000023_1.0  135 CSQCGAHLGHIFDDGP-RPTGKRYCINSAALSF                 
                     CSQCG HLGH+F+      T +R+C+NS ++ F                 
                     CSQCGGHLGHVFEGEKFTDTNERHCVNSVSIKF                 
supercont1.1467 2562 tactggccgcgtgggatagaagcctgatgtaat                 
                     ggagggatgattagaatcacaagagtactctat                 
                     ctacgtcggtccacggcatccatctcccaacgt                 


//
Making a R in phase 2 intron
Making a T in phase 2 intron
>supercont1.1467:subseq(0,12511).pep
EWKSSLSAQEYDVIRNKGTEAPGTGEYNKLYPKADEGHFACRACKNPIYSATAKFDSGCG
WPAFDKCYEGSITTEIDQTMGLKRIEIMCSQCGGHLGHVFEGEKFTDTNERHCVNSVSIK
F
//
supercont1.1467:subseq(0,12511)	GeneWise	match	1057	2660	80.40	+	.	supercont1.1467:subseq(0,12511)-genewise-prediction-1
supercont1.1467:subseq(0,12511)	GeneWise	cds	1057	1181	0.00	+	0	supercont1.1467:subseq(0,12511)-genewise-prediction-1
supercont1.1467:subseq(0,12511)	GeneWise	intron	1182	1782	0.00	+	.	supercont1.1467:subseq(0,12511)-genewise-prediction-1
supercont1.1467:subseq(0,12511)	GeneWise	cds	1783	1893	0.00	+	1	supercont1.1467:subseq(0,12511)-genewise-prediction-1
supercont1.1467:subseq(0,12511)	GeneWise	intron	1894	2533	0.00	+	.	supercont1.1467:subseq(0,12511)-genewise-prediction-1
supercont1.1467:subseq(0,12511)	GeneWise	cds	2534	2660	0.00	+	1	supercont1.1467:subseq(0,12511)-genewise-prediction-1
//

genewise output
Score 16.88 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000023_1.0   18 CLCLCLA-AALG                                      
                     CLC CL+  ALG                                      
                     CLCTCLSYSALG                                      
supercont1.1467-3994 tctattttagcg                                      
                     gtgcgtcagctg                                      
                     tgtacggctccc                                      


//
>supercont1.1467:subseq(0,12511).pep
CLCTCLSYSALG
//
supercont1.1467:subseq(0,12511)	GeneWise	match	3994	3959	16.88	-	.	supercont1.1467:subseq(0,12511)-genewise-prediction-1
supercont1.1467:subseq(0,12511)	GeneWise	cds	3994	3959	0.00	-	0	supercont1.1467:subseq(0,12511)-genewise-prediction-1
//
