Command line: [exonerate -m p2g -q querysX/X_selR_droso.fa -t subseq/subseq.selR_droso.fa.CONTRA.Sphaeroforma_arctica.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) # Drosophila melanogaster # Complete
        Target: supercont1.1467:subseq(0,12547) of Sphaeroforma arctica JP610
         Model: protein2genome:local
     Raw score: 151
   Query range: 49 -> 134
  Target range: 1774 -> 2666

   50 : GlnCysIleValCysHisGlnAspLeuPheSerSerGluThrLysTyrAspSerGlyCysGl :   70
        |||! !! !!.!||| ! .!.  !:!!!:!|||:!!  !.!!|||!:!||||||||||||||
        GlnTyrArgAlaCysLysAsnProIleTyrSerAlaThrAlaLysPheAspSerGlyCysGl
 1775 : CAATATAGAGCTTGCAAGAATCCCATCTACTCAGCTACGGCGAAGTTTGACAGTGGGTGTGG : 1835

   71 : yTrpProAlaPheAsnAspValLeuAspLysGlyLysValThrLeuHisArgAspAla{Se} :   90
        |||||||||||||   |||  !! ! !!:!!|||..!:!!|||  !.!.! !|||  !{!!}
        yTrpProAlaPhe---AspLysCysTyrGluGlySerIleThrThrGluIleAspGln{Th}
 1836 : ATGGCCTGCTTTC---GACAAGTGCTACGAGGGTTCAATCACAACAGAGATCGACCAA{AC} : 1892

   91 :   >>>> Target Intron 1 >>>>  {r}IleProGlyMetValArgThrGluValArg :  100
                    640 bp           {!}!!:   |||:!!  !|||! !|||:!!! !
        ++                         ++{r}Met---GlyLeuLysArgIleGluIleMet
 1893 : gt.........................ag{G}ATG---GGTTTGAAACGTATAGAGATTATG : 2559

  101 : CysSerArgCysSerAlaHisMetGlyHisValPheAsp<->AspGlyProProProLysHi :  120
        ||||||!:!|||.!!!.!|||:!!||||||||||||!!:   !!:  !  ! !!  !!  :!
        CysSerGlnCysGlyGlyHisLeuGlyHisValPheGluGlyGluLysPheThrAspThrAs
 2560 : TGCAGTCAATGCGGGGGTCACCTGGGGCATGTCTTCGAAGGCGAGAAGTTCACAGATACCAA : 2622

  121 : sArgArgPheCysIleAsnSerAlaSerIleAspPheValLys :  134
        !..!|||  !|||:!!||||||!.!|||||| ! |||||||||
        nGluArgHisCysValAsnSerValSerIleLysPheValLys
 2623 : CGAACGTCACTGTGTCAACTCCGTATCAATCAAGTTTGTAAAG : 2666

vulgar: SPP00000089_1.0 49 134 . supercont1.1467:subseq(0,12547) 1774 2666 + 151 M 25 75 G 1 0 M 14 42 S 0 2 5 0 2 I 0 636 3 0 2 S 1 1 M 1 3 G 1 0 M 21 63 G 0 3 M 21 63

C4 Alignment:
------------
         Query: SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) # Drosophila melanogaster # Complete
        Target: supercont1.1467:subseq(0,12547) of Sphaeroforma arctica JP610
         Model: protein2genome:local
     Raw score: 111
   Query range: 137 -> 186
  Target range: 2546 -> 2696

  138 : ArgThrGluValArgCysAlaArgCysAsnAlaHisMetGlyHisValPheGlu<->AspGl :  157
        |||! !|||:!!! !|||::!!:!|||...!.!|||:!!|||||||||||||||   !!:  
        ArgIleGluIleMetCysSerGlnCysGlyGlyHisLeuGlyHisValPheGluGlyGluLy
 2547 : CGTATAGAGATTATGTGCAGTCAATGCGGGGGTCACCTGGGGCATGTCTTCGAAGGCGAGAA : 2607

  158 : yProLysProThrArgLysArgTyrCysIleAsnSerAlaSerIleGluPheValAsnAlaA :  178
        !  !! !  !|||!.!:!!|||:!!|||:!!||||||!.!||||||:!!||||||!!.!.! 
        sPheThrAspThrAsnGluArgHisCysValAsnSerValSerIleLysPheValLysGlyL
 2608 : GTTCACAGATACCAACGAACGTCACTGTGTCAACTCCGTATCAATCAAGTTTGTAAAGGGAA : 2670

  179 : spProAlaThrSerSerProProVal :  186
        ! ||||||  !..!!.! !!  !|||
        ysProAlaGluGluLysAlaGluVal
 2671 : AGCCGGCCGAAGAGAAAGCGGAGGTG : 2696

vulgar: SPP00000089_1.0 137 186 . supercont1.1467:subseq(0,12547) 2546 2696 + 111 M 18 54 G 0 3 M 31 93
-- completed exonerate analysis
