Command line: [exonerate -m p2g -q querysX/X_selR3_human.fa -t subseq/subseq.selR3_human.fa.CONTRA.Ichthyophthirius_multifiliis_strain_G5.fa]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3 (SelR3) # Homo sapiens # Complete
        Target: gi|340504152|gb|GL983967.1|:subseq(39014,36372) Ichthyophthirius multifiliis unplaced genomic scaffold scaff_1120509251003, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 284
   Query range: 45 -> 166
  Target range: 9996 -> 10356

    46 : SerGlnGlnGluLeuArgLysArgLeuThrProLeuGlnTyrHisValThrGlnGluLys :    65
         ..!:!!.!.||||||!:!!!.||||||:!!  !:!! !!!:! !!|||||| !!.!.   
         AspLysAsnGluLeuLysAsnArgLeuSerLysIle***PheAspValThr***AsnAla
  9997 : GATAAAAACGAATTAAAAAATCGTCTTTCTAAAATTTAATTCGATGTTACCTAAAATGCT : 10054

    66 : GlyThrGluSerAlaPheGluGlyGluTyrThrHisHisLysAspProGlyIleTyrLys :    85
         !.!||||||! ! !!|||  !|||   |||  ! ! |||   :!!||||||   |||!!.
         AlaThrGlu***ProPheThrGlyIleTyrAspLysHisPheAsnProGly***TyrAsn
 10055 : GCTACAGAATAACCGTTTACAGGTATTTATGATAAACATTTTAATCCAGGATAGTATAAT : 10114

    86 : CysValValCysGlyThrProLeuPheLysSerGluThrLysPheAspSerGlySerGly :   105
         ||||||||||||..!! !  !||||||!!.! ! !!||||||!:!|||||||||||||||
         CysValValCysAsnIleLysLeuPheAsnTyr***ThrLysTyrAspSerGlySerGly
 10115 : TGTGTGGTTTGTAATATTAAATTATTCAATTATTAAACTAAATATGATTCCGGAAGTGGC : 10174

   106 : TrpProSerPheHisAspValIleAsnSerGluAlaIleThrPheThrAspAspPheSer :   125
         ||||||:!!|||  !.!.! !:!!   ..!|||  !|||  !   ! !  !|||   |||
         TrpProAlaPheSerGlnGlyVal---GluGluAsnIleLeuGluLysIleAspLysSer
 10175 : TGGCCAGCTTTTAGTCAAGGAGTT---GAAGAAAACATATTAGAAAAAATTGATAAAAGT : 10231

   126 : TyrGlyMetHisArgValGluThrSerCysSerGlnCysGlyAlaHisLeuGlyHisIle :   145
         :!!||||||  !|||  !|||..!! !|||!.!.!.|||||||||||||||||||||:!!
         HisGlyMetValArgLysGluValLeuCysLysAsnCysGlyAlaHisLeuGlyHisVal
 10232 : CATGGAATGGTCAGAAAAGAAGTTTTATGCAAAAATTGTGGGGCTCATTTAGGCCATGTT : 10291

   146 : PheAspAspGlyProArgProThrGlyLysArgTyrCysIleAsnSerAlaAlaLeuSer :   165
         |||||||||||| !!! !  !|||  !   |||||||||||||||||||||:!!:!!..!
         PheAspAspGlySerThrAsnThr***LeuArgTyrCysIleAsnSerAlaSerIleAsp
 10292 : TTTGATGATGGATCTACAAATACTTAACTTAGATATTGTATTAATTCTGCTTCTATTGAT : 10351

   166 : Phe :   166
         |||
         Phe
 10352 : TTT : 10356

vulgar: SPP00000023_1.0 45 166 . gi|340504152|gb|GL983967.1|:subseq(39014,36372) 9996 10356 + 284 M 68 204 G 1 0 M 52 156
-- completed exonerate analysis
