T-COFFEE, Version_7.54(Tue Jan 13 18:15:23 WEST 2009)
Cedric Notredame 
CPU TIME:0 sec.
SCORE=98
*
 BAD AVG GOOD
*
SPP00000059_1.0   :  98
PHYCAscaffold_3   :  98
cons              :  98

SPP00000059_1.0   MTTKKFRMEDVGLSKLKVEKNPKDVKQTEWKSVLPNEVYRVARES
PHYCAscaffold_3   ----------------------------EWKQRLTPMQFQVLRLK

cons                                          ***. *.   ::* * .


SPP00000059_1.0   GTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFS
PHYCAscaffold_3   GTERAGTGEYNKHKETGVYVCAGCKTPVYTSTTKFDSGCGWPAFY

cons              *** . ** :*.* *.* ***  * : ::.* :** :******* 


SPP00000059_1.0   ESVGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPKETT
PHYCAscaffold_3   DA-------------------------------------------

cons              ::                                           


SPP00000059_1.0   GERYCINSVCMAFEKKD
PHYCAscaffold_3   ----------------I

cons