TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) #
Saccharomyces cerevisiae # Complete
         (168 letters)

Database: ppolyc.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig357  22014 25254                                                 62   1e-09
Contig9686  3426 8230                                                  58   2e-08
Contig16329  1472 1472                                                 41   0.003
Contig26994  871 871                                                   33   0.74 
Contig21057  1801 4118                                                 33   0.74 
Contig4338  9345 18783                                                 31   2.8  

>Contig357  22014 25254
          Length = 25254

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 26/46 (56%), Positives = 32/46 (69%)
 Frame = +1

Query: 65    TGAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWPAFYEEVSPGA 110
             TG Y    E GVY CA C+ PLY S+ KFD+ CGWPAFY+ + PG+
Sbjct: 24931 TGEYNKHKEQGVYTCAGCNTPLYKSETKFDSGCGWPAFYQAI-PGS 25065



 Score = 31.6 bits (70), Expect = 1.6
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +3

Query: 42    KWNDALTPLQLMVLRDKATERPNTG 66
             +W   LTP Q  VLR+K TER  TG
Sbjct: 24714 EWRVKLTPEQFRVLREKGTERAGTG 24788


>Contig9686  3426 8230
          Length = 8230

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = -1

Query: 66   GAYLHTNESGVYHCANCDRPLYSSKAKFDARCGWPAFYEEVSPGAI 111
            G Y    E G YHCA CD PLY S+ KF++  GWPAFY+ + PG I
Sbjct: 4492 GEYDKHFEKGTYHCAGCDSPLYKSETKFNSGSGWPAFYDSI-PGKI 4358



 Score = 33.1 bits (74), Expect = 0.57
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 66   GAYLHTNESGVYHCANCDRPLYSS 89
            G Y    E G YHCA CD PLY +
Sbjct: 4681 GEYDKHFEKGTYHCAGCDSPLYKT 4610


>Contig16329  1472 1472
          Length = 1472

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 18/32 (56%), Positives = 20/32 (62%)
 Frame = -2

Query: 109  GAITYHRDNSLMPARVEICCARCGGHLGHVFE 140
            GA+    D S    R EI CA CGGHLGHVF+
Sbjct: 1333 GALKIEEDRSHGMLRTEIMCAACGGHLGHVFK 1238



 Score = 30.8 bits (68), Expect = 2.8
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = -1

Query: 141 GEGWKQLLNLPKDTRHCVNSASLNLKK 167
           GEG+K     P D RHCVNS SL  +K
Sbjct: 455 GEGYKT----PTDERHCVNSISLKFEK 387


>Contig26994  871 871
          Length = 871

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 22/92 (23%)
 Frame = +3

Query: 61  ERPNTGAYLHTNESGVYHCANCDRPLYSSKAKFD----------------------ARCG 98
           ++PN    ++T E G Y CA C  PL++S+ +                        A+ G
Sbjct: 18  KKPN*NHRIYTEE-GTYLCAGCLAPLFASQDQISPSNSTGTEKGKSLVATKGNLSVAKIG 194

Query: 99  WPAFYEEVSPGAITYHRDNSLMPARVEICCAR 130
            P F   V+P ++++  D S    R+   CA+
Sbjct: 195 KPCFQCAVTPASLSFAEDYSYGICRILATCAQ 290


>Contig21057  1801 4118
          Length = 4118

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
 Frame = +3

Query: 21  NIVLTQYWNKSKKMSDESNDVKWNDALTPLQLMVLRDKATERPNTGAYLHT---NESGVY 77
           N +L  +W   KK++    DV               D+ T+ PN    +HT   NE G Y
Sbjct: 345 NSILPHFWI*LKKINLLKIDV---------------DECTKYPNGNCDMHTACTNEIGYY 479

Query: 78  HCANCDRPLYSSKAK 92
           +C++C  P YS   K
Sbjct: 480 NCSDCP-PFYSGSGK 521


>Contig4338  9345 18783
          Length = 18783

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 72    NESGVYHCANCDRPLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICC 128
             +E G+Y C+ C  PL+ S  K       P+F   +  G + Y  D S    R+   C
Sbjct: 15541 DEDGLYTCSRCATPLFLSSDKLTGEHKKPSFSRSIQ-GTLIYSDDYSYGLPRLLTTC 15374


  Database: ppolyc.fa
    Posted date:  Nov 22, 2011  7:00 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.320    0.134    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,311,772
Number of Sequences: 297657
Number of extensions: 1032520
Number of successful extensions: 4265
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4262
length of query: 168
length of database: 106,339,350
effective HSP length: 105
effective length of query: 63
effective length of database: 75,085,365
effective search space: 4730377995
effective search space used: 4730377995
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
