TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000077_1.0 # Protein # Selenoprotein R  (SelR) #
Saccharomyces cerevisiae # Complete
         (168 letters)

Database: arara.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330850547|gb|ADNL01000056.1| Astrammina rara contig00059, who...    25   0.66 
gi|330850407|gb|ADNL01000196.1| Astrammina rara contig00206, who...    25   1.1  
gi|330849569|gb|ADNL01001034.1| Astrammina rara contig01213, who...    24   1.5  
gi|330848092|gb|ADNL01002511.1| Astrammina rara contig02980, who...    23   3.3  
gi|330847827|gb|ADNL01002776.1| Astrammina rara contig03267, who...    23   4.3  
gi|330850425|gb|ADNL01000178.1| Astrammina rara contig00188, who...    22   5.6  
gi|330850586|gb|ADNL01000017.1| Astrammina rara contig00018, who...    22   5.6  
gi|330848142|gb|ADNL01002461.1| Astrammina rara contig02926, who...    22   7.3  
gi|330847829|gb|ADNL01002774.1| Astrammina rara contig03265, who...    22   9.5  
gi|330848561|gb|ADNL01002042.1| Astrammina rara contig02436, who...    22   9.5  

>gi|330850547|gb|ADNL01000056.1| Astrammina rara contig00059, whole
            genome shotgun sequence
          Length = 2905

 Score = 25.4 bits (54), Expect = 0.66
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 6/78 (7%)
 Frame = -1

Query: 60   TERPNTGAYLHTNESGVYHCANCDR------PLYSSKAKFDARCGWPAFYEEVSPGAITY 113
            T   N    LHT   GVY CAN  R      P  S           P + +  S     Y
Sbjct: 1393 TNTDNWHTSLHTGGIGVY*CANDKRVSTRF*PKLSCSVV*HISLLLPIYKKRSSVSGWLY 1214

Query: 114  HRDNSLMPARVEICCARC 131
                 LM + V +CC  C
Sbjct: 1213 *A-TLLMLSNVNVCCMMC 1163


>gi|330850407|gb|ADNL01000196.1| Astrammina rara contig00206, whole
           genome shotgun sequence
          Length = 439

 Score = 24.6 bits (52), Expect = 1.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 78  HCANCDRPLYSS 89
           HC NCD+ +YS+
Sbjct: 423 HCVNCDQSIYSA 388


>gi|330849569|gb|ADNL01001034.1| Astrammina rara contig01213, whole
           genome shotgun sequence
          Length = 261

 Score = 24.3 bits (51), Expect = 1.5
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 85  PLYSSKAKFDARCGWPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGH 137
           PL  +++   AR  WP    E   G +      +L+PAR      +CG H  H
Sbjct: 156 PLEGTRSCSRARACWPTQDRE---GCVA--STETLLPARNGYSATKCGMHRHH 13


>gi|330848092|gb|ADNL01002511.1| Astrammina rara contig02980, whole
           genome shotgun sequence
          Length = 295

 Score = 23.1 bits (48), Expect = 3.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 99  WPAFYEEVSPGAITYHRDNSLMPARVEICCARCGGHLGHVFEGEGWK 145
           WP  Y+ +S G  T     S +    ++C  + GG  G   +  GWK
Sbjct: 112 WP*SYKSISSGIWTRL*SLSSVEGGWKVCGGKVGG-AGSTEKVGGWK 249


>gi|330847827|gb|ADNL01002776.1| Astrammina rara contig03267, whole
            genome shotgun sequence
          Length = 2079

 Score = 22.7 bits (47), Expect = 4.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 43   WNDALTPLQLMVLRDKATERP 63
            WND  T L++ V  +K  +RP
Sbjct: 1137 WNDNKTTLKIYVKSNKKQKRP 1199


>gi|330850425|gb|ADNL01000178.1| Astrammina rara contig00188, whole
           genome shotgun sequence
          Length = 2971

 Score = 22.3 bits (46), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +2

Query: 93  FDARCG-WPAFYEEVSPGAITYH 114
           FD   G  P FYE + P  + YH
Sbjct: 218 FDGENGLMPTFYEYILPTRLPYH 286


>gi|330850586|gb|ADNL01000017.1| Astrammina rara contig00018, whole
           genome shotgun sequence
          Length = 297

 Score = 22.3 bits (46), Expect = 5.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 125 EICCARCGGHLGH 137
           ++ CA CGG + H
Sbjct: 201 DVACAGCGGRVAH 239


>gi|330848142|gb|ADNL01002461.1| Astrammina rara contig02926, whole
            genome shotgun sequence
          Length = 5925

 Score = 21.9 bits (45), Expect = 7.3
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
 Frame = +2

Query: 16   FPGRRNIVLTQYWNKSKKMSDESNDVKW--NDAL---TPLQLMVLRDKATER------PN 64
            F G+ + +  QY NKS  +  E +  KW  N +L   +P  ++ L  ++  R       +
Sbjct: 5267 FLGQLDEIKIQY*NKSWWLKPEKHWSKWCDNSSLGF*SPNWVLSLAPRSQTRL*YQSHSD 5446

Query: 65   TGAYLHTNE 73
            T A +HT+E
Sbjct: 5447 TPACIHTSE 5473


>gi|330847829|gb|ADNL01002774.1| Astrammina rara contig03265, whole
           genome shotgun sequence
          Length = 724

 Score = 21.6 bits (44), Expect = 9.5
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 9   VITVRRTFPGRRNIVLTQYWNKSK 32
           +I  +  FPG+    + Q+W + K
Sbjct: 505 IIWSKNAFPGKELTRMRQWWKRPK 576


>gi|330848561|gb|ADNL01002042.1| Astrammina rara contig02436, whole
           genome shotgun sequence
          Length = 171

 Score = 21.6 bits (44), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 115 RDNSLMPARVEICC 128
           R + L P+R E+CC
Sbjct: 119 RKSGLRPSRHEVCC 78


  Database: arara.fa
    Posted date:  Nov 22, 2011  5:41 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.320    0.134    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 360,522
Number of Sequences: 3231
Number of extensions: 4995
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 168
length of database: 483,365
effective HSP length: 68
effective length of query: 100
effective length of database: 263,657
effective search space: 26365700
effective search space used: 26365700
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)
