TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) #
Drosophila melanogaster # Complete
         (197 letters)

Database: tcongo.fa 
           11 sequences; 22,287,946 total letters

Searching...........done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

T.congo.pschr.11                                                       97   5e-21
TcIL3000_10_v2.embl                                                    33   0.093
T.congo.pschr.8                                                        29   1.8  
T.congo.pschr.9                                                        28   3.0  
T.congo.pschr.5                                                        27   5.1  
T.congo.pschr.3.                                                       27   5.1  

>T.congo.pschr.11
          Length = 4797796

 Score = 97.1 bits (240), Expect = 5e-21
 Identities = 46/120 (38%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
 Frame = +2

Query: 16      RKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWPAFN 75
               R++LTP Q++V ++  T+ PF G +N+H+E G Y C  C   L++S  K+   CGWPAF 
Sbjct: 3358430 REKLTPQQFRVLRQKATDPPF-GIFNEHFEAGTYHCAACRSLLYTSAMKFPCSCGWPAFY 3358606

Query: 76      DVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDD---GPPPKHRRFCINSASIDF 132
               D +    + +         VRTE+ C+ C  H+GHVF     G PP + R C+N +S+ F
Sbjct: 3358607 DCVPLAVLEVPDSDG----VRTEILCNACRGHLGHVFRGEGFGNPPPNERHCVNGSSLVF 3358774



 Score = 28.1 bits (61), Expect = 3.0
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
 Frame = +2

Query: 19     LTPVQYQVTQEAGTERPFTGCYN----KHYEKGVY---QCIVC-HQDLFSSETKYDS 67
              + P   +  +  G +RP+  C +    KH+ +      +C++C H D   SE +Y+S
Sbjct: 400646 MAPSPAEECRRLGFQRPYVWCRHCELLKHHTEATALHEECLICCHPDKIQSEERYES 400816


>TcIL3000_10_v2.embl
          Length = 3612457

 Score = 33.1 bits (74), Expect = 0.093
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -1

Query: 92      PGMVRTEVRCSRCSAHMGHVF--DDGPPPKHRRFCINSASIDFVKKRIRTEVRCARCNAH 149
               PG++R +  C R +  +G      DGPPPK    CI+ +         R  + CA C+  
Sbjct: 1549678 PGILRCDTNCIRLAPSLGICMT*SDGPPPKLTT*CIHGS-----HTTPRQNLVCASCSCS 1549514

Query: 150     MGHV 153
                G V
Sbjct: 1549513 TGAV 1549502



 Score = 27.3 bits (59), Expect = 5.1
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 9/44 (20%)
 Frame = -3

Query: 71     WPAFNDVLDKGKVTLHRDASIPGMVR---------TEVRCSRCS 105
              W  F  +L    VTLH D  IP  VR           +RC  CS
Sbjct: 288602 WVTFGSLLTVTPVTLHSDPVIPPTVRRSCRGV*S*RNLRCLHCS 288471



 Score = 26.9 bits (58), Expect = 6.7
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
 Frame = +1

Query: 125     INSASIDFVKKRIRTEVRCARCNAHMGHVFEDGPKPTR------KRYCI 167
               +N  SIDF    I     C R    + HVF + P PTR       R+C+
Sbjct: 3143866 LNIPSIDFQSTAIYHWSCCTRFGTDLNHVFSE-PLPTRITARGASRWCV 3144009


>T.congo.pschr.8
          Length = 2451971

 Score = 28.9 bits (63), Expect = 1.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 47    GVYQCIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVT 84
             G Y   VC + LF  +T YD G G   F   + K K T
Sbjct: 99146 GEYVVAVCEKFLFFMKTTYDDGRGGNGFTTRMGKDKPT 99033


>T.congo.pschr.9
          Length = 2092392

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 39     CYNKHYEKGVYQCIVCHQDLFSSETKYDSGCG 70
              C NKH E    QC +C   + S ETK ++ CG
Sbjct: 412660 CLNKHLEDVSSQCPLCRFSMSSLETKCNA-CG 412752


>T.congo.pschr.5
          Length = 1517473

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 19/83 (22%), Positives = 28/83 (33%)
 Frame = -1

Query: 42      KHYEKGVYQCIVCHQDLFSSETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVRTEVRC 101
               +HY     +C + HQ+       +D      +  D     K  LHRD  +P        C
Sbjct: 1108354 RHYPSQTARCRIGHQESHHHLAPHDDFRAVCSLQDRKRVRKHFLHRDHPVPERSLVLFLC 1108175

Query: 102     SRCSAHMGHVFDDGPPPKHRRFC 124
                 C       +  G PP+    C
Sbjct: 1108174 FLCRELAPAPYAPGCPPRPPHHC 1108106


>T.congo.pschr.3.
          Length = 1451265

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -2

Query: 48     VYQCIVCHQDL 58
              VYQC++CH+DL
Sbjct: 600431 VYQCVICHRDL 600399



 Score = 26.6 bits (57), Expect = 8.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 12    KEELRKRLTP---VQYQVTQEAGTERPFTGCYNKH 43
             + E RKRL P    Q  ++  +   RPF GC++ H
Sbjct: 75616 RNEHRKRLQPHTRTQSFISSNSHCYRPFPGCFSLH 75512


  Database: tcongo.fa
    Posted date:  Nov 22, 2011  6:52 PM
  Number of letters in database: 22,287,946
  Number of sequences in database:  11
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,674,075
Number of Sequences: 11
Number of extensions: 135304
Number of successful extensions: 585
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 481
Number of HSP's gapped (non-prelim): 298
length of query: 197
length of database: 7,429,315
effective HSP length: 92
effective length of query: 105
effective length of database: 7,428,303
effective search space: 779971815
effective search space used: 779971815
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
