TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) #
Drosophila melanogaster # Complete
         (197 letters)

Database: imulti.fa 
           2017 sequences; 48,799,969 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplace...   129   1e-30
gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplace...    64   1e-10

>gi|340504152|gb|GL983967.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251003, whole genome shotgun
             sequence
          Length = 75386

 Score =  129 bits (325), Expect = 1e-30
 Identities = 65/125 (52%), Positives = 82/125 (65%)
 Frame = +3

Query: 10    VNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGC 69
             V+K EL+ RL+ + + VT  A TE PFTG Y+KH+  G Y C+VC+  LF+  TKYDSG 
Sbjct: 49008 VDKNELKNRLSKI*FDVT*NAATE*PFTGIYDKHFNPG*YNCVVCNIKLFNY*TKYDSGS 49187

Query: 70    GWPAFNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSAS 129
             GWPAF+  +++    L +     GMVR EV C  C AH+GHVFDDG      R+CINSAS
Sbjct: 49188 GWPAFSQGVEEN--ILEKIDKSHGMVRKEVLCKNCGAHLGHVFDDGSTNT*LRYCINSAS 49361

Query: 130   IDFVK 134
             IDF K
Sbjct: 49362 IDF*K 49376


>gi|340502385|gb|GL984186.1| Ichthyophthirius multifiliis unplaced
             genomic scaffold scaff_1120509251225, whole genome shotgun
             sequence
          Length = 54728

 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
 Frame = +1

Query: 16    RKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWPAF- 74
             R  +TP  Y +T   G ERPFTG      E G Y C VC   LF    K+ +  G  +F 
Sbjct: 28969 RLNMTPH*YWIT*GKGMERPFTGDKWFE*EVGYYHCSVCSTRLFDWNLKFLTTTGMASFW 29148

Query: 75    ----NDVLDKGKVTLHRDASIPGMV-----------RTEVRCSRCSAHMGHVFDDGPPPK 119
                 N V  K       +     ++           + +  C++C + +G VF DGPPP 
Sbjct: 29149 SCLNNSVNIKDDNMYEIEEDFINVI*NNFQK**TVEKKKACCAKCDSFLGLVFFDGPPPS 29328

Query: 120   HRRFCINSASIDFVKKRIRTE 140
              +R+ INS +I +VKK   T+
Sbjct: 29329 FKRYSINS*AI*YVKKPYWTD 29391


  Database: imulti.fa
    Posted date:  Nov 22, 2011  6:23 PM
  Number of letters in database: 48,799,969
  Number of sequences in database:  2017
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,280,342
Number of Sequences: 2017
Number of extensions: 76889
Number of successful extensions: 174
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 43
length of query: 197
length of database: 16,266,656
effective HSP length: 98
effective length of query: 99
effective length of database: 16,068,990
effective search space: 1590830010
effective search space used: 1590830010
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
