TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) #
Drosophila melanogaster # Complete
         (197 letters)

Database: cfasci.fa 
           1089 sequences; 37,048,325 total letters

Searching...................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cf_Contig980  |  | 1 to 109705                                         89   3e-18
Cf_Contig1041  |  | 1 to 166514                                        33   0.11 
Cf_Contig1066  |  | 1 to 293964                                        32   0.33 
Cf_Contig1018  |  | 1 to 165852                                        31   0.73 
Cf_Contig1055  |  | 1 to 461976                                        30   0.96 
Cf_Contig547  |  | 1 to 24883                                          30   1.6  
Cf_Contig909  |  | 1 to 33793                                          29   2.1  
Cf_Contig664  |  | 1 to 36466                                          29   2.1  
Cf_Contig554  |  | 1 to 11926                                          29   2.8  
Cf_Contig983  |  | 1 to 191195                                         28   3.6  
Cf_Contig771  |  | 1 to 94184                                          28   3.6  
Cf_Contig1057  |  | 1 to 538345                                        28   4.8  
Cf_Contig1010  |  | 1 to 178774                                        28   6.2  
Cf_Contig905  |  | 1 to 92649                                          28   6.2  
Cf_Contig858  |  | 1 to 110926                                         28   6.2  
Cf_Contig1047  |  | 1 to 300975                                        27   8.1  
Cf_Contig1033  |  | 1 to 89544                                         27   8.1  
Cf_Contig976  |  | 1 to 65791                                          27   8.1  
Cf_Contig973  |  | 1 to 202041                                         27   8.1  
Cf_Contig932  |  | 1 to 156640                                         27   8.1  

>Cf_Contig980  |  | 1 to 109705
          Length = 109705

 Score = 88.6 bits (218), Expect = 3e-18
 Identities = 47/123 (38%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
 Frame = +2

Query: 14   ELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGCGWPA 73
            E +  LTP QY++ +E GT+ P  G Y+  +E G Y C  C   L++S  K+  GCGWP 
Sbjct: 4748 EWKAILTPTQYRILREKGTD-PVGGKYDDLFEDGEYVCAACKTPLYTSAMKFACGCGWPG 4924

Query: 74   FNDVLDKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVF-DDG--PPPKHRRFCINSASI 130
            F D + K   T+       G  R E+ C+ C++H+GHVF ++G   PP + R C+N+ S+
Sbjct: 4925 FWDCIPK---TVRELPDKDGR-RVEIVCNACNSHLGHVFRNEGFRNPPPNERHCVNNTSV 5092

Query: 131  DFV 133
             F+
Sbjct: 5093 IFI 5101


>Cf_Contig1041  |  | 1 to 166514
          Length = 166514

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 79    DKGKVTLHRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRR 122
             D+ +V+ H   ++ G  R E RC       GH+  DGP    RR
Sbjct: 27358 DRQRVSRHEGDAVDGAARVEHRCRHRRRTAGHLLIDGPTASQRR 27227


>Cf_Contig1066  |  | 1 to 293964
          Length = 293964

 Score = 32.0 bits (71), Expect = 0.33
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = -1

Query: 101    CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVR-------CARCNAHMGHV 153
              C  C    GH+  + P  +  + C N  S + + +    E +       C  C    GH+
Sbjct: 142635 CYNCG-QTGHLSRECPSERKPKACYNCGSTEHLSRECPNEAKTGADSRTCYNCG-QSGHL 142462

Query: 154    FEDGPKPTRKRYCINSASIEFVNAD 178
                D P   + + C N  S E ++ +
Sbjct: 142461 SRDCPSERKPKACYNCGSTEHLSRE 142387



 Score = 32.0 bits (71), Expect = 0.33
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = -2

Query: 101    CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVR-------CARCNAHMGHV 153
              C  C    GH+  + P  +  + C N  S + + +    E +       C  C    GH+
Sbjct: 139658 CYNCG-QTGHLSRECPSERKPKACYNCGSTEHLSRECPNEAKTGADSRTCYNCG-QSGHL 139485

Query: 154    FEDGPKPTRKRYCINSASIEFVNAD 178
                D P   + + C N  S E ++ +
Sbjct: 139484 SRDCPSERKPKACYNCGSTEHLSRE 139410



 Score = 27.3 bits (59), Expect = 8.1
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
 Frame = -2

Query: 68     GCGWPAFNDVLDKGKVTLHRDASIPG----------MVRTEVRCSRC 104
              G GW +    L  G V LHR + +PG           V T  +C RC
Sbjct: 169796 GVGWRSPTSTLSDGGVRLHRLSYVPGAAAPCTRRTSAVGTTDKCVRC 169656


>Cf_Contig1018  |  | 1 to 165852
          Length = 165852

 Score = 30.8 bits (68), Expect = 0.73
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 116    PPPKHRRFCINSASIDFVKKRIR-TEVRCARCNAHMGH 152
              PPP HRR    +AS  F   R R T  RC RC    G+
Sbjct: 102135 PPPLHRRPFHKAASFSFTVWRWRSTRRRCMRCRGRCGN 102022


>Cf_Contig1055  |  | 1 to 461976
          Length = 461976

 Score = 30.4 bits (67), Expect = 0.96
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 87     RDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFV 133
              R ++ P + R+ + CS+CSA   H F  GP            ++DF+
Sbjct: 206048 RTSTFPRVHRSSLPCSKCSAGRWHTFSFGPSSTMPSTSSKKKTLDFL 206188


>Cf_Contig547  |  | 1 to 24883
          Length = 24883

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 104   CSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVRCARCNAHMG 151
             C  H  H   DG P  H    ++    D  ++R RT +RCARC+   G
Sbjct: 22045 CGNH--HSNSDGVPSWH----LHRRITDAPRRRGRTAIRCARCHRRRG 21920


>Cf_Contig909  |  | 1 to 33793
          Length = 33793

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 71    WPAFNDVLDKGKV-TLHRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSAS 129
             WP  +  L +  + + HR A  PG  R+  R  R S     V   G     RR C  +A+
Sbjct: 29802 WPRCHRRLPRPAMRSAHRQADRPGAQRSHRRRRRASTQCTCVATGG-----RRCCGTTAT 29966

Query: 130   IDFVKKRIRTEVRCARC 146
                 ++R     RC+RC
Sbjct: 29967 TSRRRRRQTWRRRCSRC 30017


>Cf_Contig664  |  | 1 to 36466
          Length = 36466

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -3

Query: 117   PPKHRRFCINSAS---IDFVKKRIRTEVRCARCNAHMGH 152
             P  H R C  S +    D    R+R  +RC+RC  H  H
Sbjct: 27773 PRCHTRRCSRSGAGRARDAAGARVRVGIRCSRCTPHRSH 27657



 Score = 27.3 bits (59), Expect = 8.1
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -3

Query: 87    RDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVK-KRIRTEVRCAR 145
             RDA+    VR  +RCSRC+ H  H                 A++D V  +R R   RC+R
Sbjct: 27725 RDAA-GARVRVGIRCSRCTPHRSH----------------CAAVDAVAGRRDRPRQRCSR 27597


>Cf_Contig554  |  | 1 to 11926
          Length = 11926

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 115  GPPPKHRRFCINSASIDFVKK--RIRTEVRCARCNAHMGHVFEDGPKPTRKR 164
            GPP +  R C +SAS   V +  R R++ RC RC A        G  P R+R
Sbjct: 2801 GPPSEPARGCPSSASASAVARAARGRSDGRCLRCAAAS---CRRGQPPQRRR 2947


>Cf_Contig983  |  | 1 to 191195
          Length = 191195

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 86    HRDASIPGMVRTEVR---CSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVR 142
             HR  S P + RT  R   CSRCS   GH  D     + R++    + +  +     T+  
Sbjct: 18133 HRRRSSPPL-RTSPRSTGCSRCSTCKGHHEDGNRQRQRRKWSAAFSCVSSIDALCETQCA 18309

Query: 143   CARCN-AHMGHVFEDGPKPTRKRY 165
               RC  A  G +    P+ +R+ +
Sbjct: 18310 RVRCPIALRGQLETRRPRQSRRHH 18381


>Cf_Contig771  |  | 1 to 94184
          Length = 94184

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -2

Query: 86    HRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPP 118
             HR+A      R E  CSRC+   GH      PP
Sbjct: 15322 HREAEASRRGRREPPCSRCAGR*GHAGHTAAPP 15224


>Cf_Contig1057  |  | 1 to 538345
          Length = 538345

 Score = 28.1 bits (61), Expect = 4.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 100    RCSRCSAHMGHVFDDGPPPKHRR 122
              RC RCSAH+        PP HRR
Sbjct: 371300 RCRRCSAHL*SRCAPRSPPSHRR 371232


>Cf_Contig1010  |  | 1 to 178774
          Length = 178774

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 22     VQYQVTQEAGTERPFTGCYNKHYEKGVYQCI 52
              V ++V Q   T+RP T  YN+  ++G ++C+
Sbjct: 120759 VSHKVPQWKKTDRPKTERYNRRPKEGAFRCL 120667


>Cf_Contig905  |  | 1 to 92649
          Length = 92649

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 92    PGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSAS 129
             PG+  T   C  CSA  G   D  PP  HR   +  A+
Sbjct: 77691 PGLPSTAPACVPCSAAHGGPSDQTPPWPHRLHTVRRAA 77578


>Cf_Contig858  |  | 1 to 110926
          Length = 110926

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
 Frame = +3

Query: 87    RDASIPGMVRTEVRCSRCSA----HMGHVFDD-GPPPKHRRFCINSASIDFVKKRIRTEV 141
             RDA+  G VR  +R   C+A    H GH   D   P  H   C    + D   +      
Sbjct: 43641 RDAAFYGEVRAALRACLCAAGPSLHAGHARHDLRRPSLHPGSCAVRGAGDVCAQLEPHRQ 43820

Query: 142   RCARCNAHMGHVFEDGPKPTRKR 164
             R  RC         D P+  R R
Sbjct: 43821 RACRCGGRERGEALDKPRRLRSR 43889


>Cf_Contig1047  |  | 1 to 300975
          Length = 300975

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 146    CNAHMGHVFEDGPKPTRKRYC 166
              C AH+G      P P+R+R+C
Sbjct: 201173 CAAHVGSRLSSAPHPSRRRWC 201111


>Cf_Contig1033  |  | 1 to 89544
          Length = 89544

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 90    SIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFCI 125
             S+ G++  EV   +   + GH  DDG      RFC+
Sbjct: 80945 SLGGVITAEVHACQHRQYEGHGVDDGAVVARLRFCL 81052


>Cf_Contig976  |  | 1 to 65791
          Length = 65791

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 89    ASIPGMVRTEVRCSRCSAHMGHVFDDGP 116
             ++ P + R+   CS+CSA   H F  GP
Sbjct: 65017 STFPRVHRSSFPCSKCSAGRWHTFSFGP 64934


>Cf_Contig973  |  | 1 to 202041
          Length = 202041

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 86    HRDASIPGMVRTEVRCSRCSAHMGHVFDDGPPPKHRRFC 124
             HR AS+    R      RC AH+  + D  P P+ RR+C
Sbjct: 31197 HRRASVRRPRR------RCGAHVQPLLDAEPRPRTRRWC 31099


>Cf_Contig932  |  | 1 to 156640
          Length = 156640

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 20/72 (27%), Positives = 26/72 (36%)
 Frame = +3

Query: 95    VRTEVRCSRCSAHMGHVFDDGPPPKHRRFCINSASIDFVKKRIRTEVRCARCNAHMGHVF 154
             +R  VRC+R     G V    PPP HR              R  T   C    A +  + 
Sbjct: 79920 LRHSVRCTRRVFCSGSVCRSTPPPTHR--------------RSTTTPVCGGAVASLPFLL 80057

Query: 155   EDGPKPTRKRYC 166
                P   R+R+C
Sbjct: 80058 TRPPSTRRRRHC 80093


  Database: cfasci.fa
    Posted date:  Nov 22, 2011  6:06 PM
  Number of letters in database: 37,048,325
  Number of sequences in database:  1089
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,176,345
Number of Sequences: 1089
Number of extensions: 329682
Number of successful extensions: 1687
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 938
length of query: 197
length of database: 12,349,441
effective HSP length: 96
effective length of query: 101
effective length of database: 12,244,897
effective search space: 1236734597
effective search space used: 1236734597
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
