TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000089_1.0 # Protein # Selenoprotein R  (SelR) #
Drosophila melanogaster # Complete
         (197 letters)

Database: alaiba.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic cont...    78   2e-19
gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic cont...    78   2e-19
gi|325189132|emb|FR824247.1| Albugo laibachii Nc14, genomic cont...    33   0.13 
gi|325190836|emb|FR824336.1| Albugo laibachii Nc14, genomic cont...    33   0.13 
gi|325192715|emb|FR824505.1| Albugo laibachii Nc14, genomic cont...    28   3.2  
gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont...    28   5.4  
gi|325185211|emb|FR824122.1| Albugo laibachii Nc14, genomic cont...    28   5.4  
gi|325190400|emb|FR824309.1| Albugo laibachii Nc14, genomic cont...    28   5.4  
gi|325190455|emb|FR824312.1| Albugo laibachii Nc14, genomic cont...    28   5.4  
gi|325181342|emb|FR824060.1| Albugo laibachii Nc14, genomic cont...    27   7.1  
gi|325184440|emb|FR824105.1| Albugo laibachii Nc14, genomic cont...    27   7.1  
gi|325190351|emb|FR824306.1| Albugo laibachii Nc14, genomic cont...    27   7.1  
gi|325181271|emb|FR824059.1| Albugo laibachii Nc14, genomic cont...    27   9.2  
gi|325192454|emb|FR824471.1| Albugo laibachii Nc14, genomic cont...    27   9.2  

>gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic contig
             CONTIG_16_NC14_v4_210924_216
          Length = 210924

 Score = 78.2 bits (191), Expect(2) = 2e-19
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +2

Query: 3     NKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSE 62
             NK +      +E + RL P QY+V +  GTE   +G YNK YE+G Y C  C   +++S+
Sbjct: 89108 NKEDVKPWTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSK 89287

Query: 63    TKYDSGCGWPAFNDVL 78
             TK+DSGCGWPAF D +
Sbjct: 89288 TKFDSGCGWPAFYDAV 89335



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 21/58 (36%)
 Frame = +1

Query: 138   RTEVRCARCN-------------------AHMGHVF--EDGPKPTRKRYCINSASIEF 174
             RTE+ CA CN                   +HMGHVF  E  P PT +R+C+NSAS+ F
Sbjct: 89428 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 89601



 Score = 34.7 bits (78), Expect(2) = 2e-19
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 21/58 (36%)
 Frame = +1

Query: 96    RTEVRCSRCS-------------------AHMGHVFDDG--PPPKHRRFCINSASIDF 132
             RTE+ C+ C+                   +HMGHVF +   P P   R C+NSAS+ F
Sbjct: 89428 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 89601


>gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic contig
             CONTIG_430_NC14_v4_18487_112
          Length = 18487

 Score = 78.2 bits (191), Expect(2) = 2e-19
 Identities = 35/76 (46%), Positives = 48/76 (63%)
 Frame = +1

Query: 3     NKSEKVTVNKEELRKRLTPVQYQVTQEAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSE 62
             NK +      +E + RL P QY+V +  GTE   +G YNK YE+G Y C  C   +++S+
Sbjct: 11350 NKEDVKPWTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSK 11529

Query: 63    TKYDSGCGWPAFNDVL 78
             TK+DSGCGWPAF D +
Sbjct: 11530 TKFDSGCGWPAFYDAV 11577



 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 24/58 (41%), Positives = 30/58 (51%), Gaps = 21/58 (36%)
 Frame = +3

Query: 138   RTEVRCARCN-------------------AHMGHVF--EDGPKPTRKRYCINSASIEF 174
             RTE+ CA CN                   +HMGHVF  E  P PT +R+C+NSAS+ F
Sbjct: 11670 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 11843



 Score = 34.7 bits (78), Expect(2) = 2e-19
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 21/58 (36%)
 Frame = +3

Query: 96    RTEVRCSRCS-------------------AHMGHVFDDG--PPPKHRRFCINSASIDF 132
             RTE+ C+ C+                   +HMGHVF +   P P   R C+NSAS+ F
Sbjct: 11670 RTEIVCANCNG*NFEYRAALAQ*TDKLSYSHMGHVFKNEGFPTPTDERHCVNSASLVF 11843


>gi|325189132|emb|FR824247.1| Albugo laibachii Nc14, genomic contig
             CONTIG_202_NC14_v4_47003_141
          Length = 47003

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 95    VRTEVRCSRCSAHMGHVFD--DGPPPKHRRFCINSASIDFVKKRIRTEVRCA 144
             ++T +R  R   H  H F    G   KH    INS S+ F+KKRI T V CA
Sbjct: 36556 LQTTIRYIRL*VH-SHFFPWARGKSSKHVLVIINSFSLIFIKKRISTSVGCA 36708


>gi|325190836|emb|FR824336.1| Albugo laibachii Nc14, genomic contig
             CONTIG_291_NC14_v4_32474_124
          Length = 32474

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 95    VRTEVRCSRCSAHMGHVFD--DGPPPKHRRFCINSASIDFVKKRIRTEVRCA 144
             ++T +R  R   H  H F    G   KH    INS S+ F+KKRI T V CA
Sbjct: 25822 LQTTIRYIRL*VH-SHFFPWARGKSSKHVLVIINSFSLIFIKKRISTSVGCA 25974


>gi|325192715|emb|FR824505.1| Albugo laibachii Nc14, genomic contig
            CONTIG_463_NC14_v4_15712_248
          Length = 15712

 Score = 28.5 bits (62), Expect = 3.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 118  PKHRRFCINSASIDFVKKRIRTEVRCARC 146
            P   RFCINS  I  +KKR+  E+   +C
Sbjct: 7204 PLTLRFCINSFIIHRIKKRVFLEIVILKC 7290


>gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig
              CONTIG_11_NC14_v4_227311_235
          Length = 227311

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 116    PPPKH--RRFCINSASIDFVKKRIRTEVRCARCNAHMGHV 153
              PPPK   R +CI  ASI     R R E+   +C  + GH+
Sbjct: 179932 PPPKDFIRYWCI-LASIQCFHTRSRNEIN*LQCRTYQGHL 180048


>gi|325185211|emb|FR824122.1| Albugo laibachii Nc14, genomic contig
             CONTIG_77_NC14_v4_95127_240
          Length = 95127

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = -1

Query: 29    EAGTERPFTGCYNKHYEKGVYQCIVCHQDLFSSETK---YDSGCGWPAF--NDVLDK 80
             E G E+   GC N H     Y    C    + + T+   YD G   P+F  ND  DK
Sbjct: 83091 ELGLEKTTFGCGNNHAFLSAYSATSCSGFEYGTNTRWLAYDVGE**PSFWSNDAFDK 82921


>gi|325190400|emb|FR824309.1| Albugo laibachii Nc14, genomic contig
            CONTIG_264_NC14_v4_36060_243
          Length = 36060

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 82   KVTLHRDASIPGMVRTEVRCSRCSAHMGHV 111
            +  LH D +    ++TE RC+RCS   GH+
Sbjct: 2092 RAALHSDQNHRKKIKTETRCNRCSL-SGHL 2006


>gi|325190455|emb|FR824312.1| Albugo laibachii Nc14, genomic contig
            CONTIG_267_NC14_v4_35820_236
          Length = 35820

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
 Frame = -1

Query: 51   CIVCHQDLFSS--ETKYDSGCGWPAFNDVLDKGKVTLHRDASIPGMVR--TEVRCSRCSA 106
            C++ H+ L +S  E+K+D+            + ++T  ++  +  + R  T  RC R + 
Sbjct: 7854 CLLWHKPLTTSQHESKHDTA-SVTCMPTASTRVRLTAEQEPVLCKLCRSNTNCRCERSAD 7678

Query: 107  HMGHVFDD----GPPPKH---RRFCINSASID 131
              GHV DD    G   KH   RR C+  A ++
Sbjct: 7677 AGGHVGDDTREGGEDSKHSRVRRSCVIHAKLE 7582


>gi|325181342|emb|FR824060.1| Albugo laibachii Nc14, genomic contig
              CONTIG_15_NC14_v4_212178_206
          Length = 212178

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +1

Query: 38     GCYNKHYEKGVYQC-IVCHQDLFSSETKY 65
              G Y +HY   VY C ++C   LF +E  +
Sbjct: 196693 GLYQRHYRNSVYACYLLCSMLLFHTEMDF 196779


>gi|325184440|emb|FR824105.1| Albugo laibachii Nc14, genomic contig
             CONTIG_60_NC14_v4_105216_191
          Length = 105216

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 134   KKRIRTEVRCARCNAHMGHVFEDGPKPTRKRYCINSASI 172
             K + R    C + NAH  HVFE G    R     N AS+
Sbjct: 79418 KTKNRRSCCCQQANAHDAHVFEQGEVQKRILCYWNRASL 79534


>gi|325190351|emb|FR824306.1| Albugo laibachii Nc14, genomic contig
            CONTIG_261_NC14_v4_36487_119
          Length = 36487

 Score = 27.3 bits (59), Expect = 7.1
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = -1

Query: 134  KKRIRTEVRCARCNAHMGHVFEDGPKPTRKRYCINSASI 172
            K + R    C + NAH  HVFE G    R     N AS+
Sbjct: 4012 KTKNRRSCCCQQANAHDAHVFEQGEVQKRILCYWNRASL 3896


>gi|325181271|emb|FR824059.1| Albugo laibachii Nc14, genomic contig
              CONTIG_14_NC14_v4_213144_226
          Length = 213144

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -1

Query: 35     PFTGCYNKHYEKGVYQCIVCHQDLFSSETKYDSGC 69
              PF   Y   Y+ G  QC   H  ++    K D  C
Sbjct: 178914 PFRLVYRNDYQNGHLQCF*MHGKIYRHSQKLDRSC 178810


>gi|325192454|emb|FR824471.1| Albugo laibachii Nc14, genomic contig
             CONTIG_428_NC14_v4_18709_273
          Length = 18709

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = -3

Query: 118   PKHRR-FCINSASIDFVKKR----IRTEVRCARCNAHMG 151
             P HRR FC ++     + +R     R  +RC  C++H+G
Sbjct: 14369 PLHRRSFCSSTCHFHLLLERKIPSARVSIRCRWCSSHLG 14253


  Database: alaiba.fa
    Posted date:  Nov 22, 2011  5:53 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.321    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,785,174
Number of Sequences: 3816
Number of extensions: 159986
Number of successful extensions: 693
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 555
length of query: 197
length of database: 10,913,379
effective HSP length: 95
effective length of query: 102
effective length of database: 10,550,859
effective search space: 1076187618
effective search space used: 1076187618
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
