TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: ppolycephalum.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig357  22014 25254                                                 53   4e-07
Contig9686  3426 8230                                                  52   9e-07
Contig16329  1472 1472                                                 44   3e-04
Contig36372  433 433                                                   32   0.99 
Contig4338  9345 18783                                                 32   1.3  
Contig33255  907 907                                                   29   6.4  
Contig20889  827 827                                                   29   8.4  
Contig5535  7336 8071                                                  29   8.4  

>Contig357  22014 25254
          Length = 25254

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 20/42 (47%), Positives = 29/42 (69%)
 Frame = +1

Query: 52    TGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESV 93
             TG +N H E+G Y C  C + L+ S+ KF +GCGWPAF +++
Sbjct: 24931 TGEYNKHKEQGVYTCAGCNTPLYKSETKFDSGCGWPAFYQAI 25056


>Contig9686  3426 8230
          Length = 8230

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 53   GGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESV 93
            G ++ HFEKG Y C  C S L+ S+ KF +G GWPAF +S+
Sbjct: 4492 GEYDKHFEKGTYHCAGCDSPLYKSETKFNSGSGWPAFYDSI 4370



 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 53   GGFNDHFEKGRYVCLCCGSELFNS 76
            G ++ HFEKG Y C  C S L+ +
Sbjct: 4681 GEYDKHFEKGTYHCAGCDSPLYKT 4610


>Contig16329  1472 1472
          Length = 1472

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 18/28 (64%), Positives = 19/28 (67%)
 Frame = -2

Query: 104  DRSHGMHRTEVRCKTCDAHLGHVFNDGP 131
            DRSHGM RTE+ C  C  HLGHVF   P
Sbjct: 1312 DRSHGMLRTEIMCAACGGHLGHVFKVPP 1229



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 129 DGPKETTGERYCINSVCMAFEKK 151
           +G K  T ER+C+NS+ + FEKK
Sbjct: 452 EGYKTPTDERHCVNSISLKFEKK 384


>Contig36372  433 433
          Length = 433

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -3

Query: 23  KDVKQTEWKSVLPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAK-FW 81
           K V + EWK     E  +V +  G E     G  +  +KG+ VCL CG E  N  +  FW
Sbjct: 416 KGVGKGEWKG---KEKEKVEKRRGREKGKRQGK*EKEKKGQEVCLVCGEETQNDFSNIFW 246


>Contig4338  9345 18783
          Length = 18783

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 60    EKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCK 117
             E G Y C  C + LF S  K       P+FS S+     ++   D S+G+ R    CK
Sbjct: 15538 EDGLYTCSRCATPLFLSSDKLTGEHKKPSFSRSI--QGTLIYSDDYSYGLPRLLTTCK 15371


>Contig33255  907 907
          Length = 907

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = -1

Query: 66  CLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHRTEVRCKTC 119
           C C     +N   K W    W       G+DA +V +V  S G  R   RC +C
Sbjct: 304 CRCA*VPAWNWGIKTWGLMVWLRVGVGGGEDAELVELVS-SSGAERYFCRCVSC 146


>Contig20889  827 827
          Length = 827

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 53  GGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDAN 98
           GG+N    K R  C CCGS    +  ++W   G   F    G+D++
Sbjct: 483 GGYNAGRRKRR*SC*CCGS---RNKKEWWRSSGQLRFGRGRGKDSS 611


>Contig5535  7336 8071
          Length = 8071

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +3

Query: 48   ETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPA 88
            +T  T  F     K   +C  CG   F+   K  A C +PA
Sbjct: 5844 QTKGTSSFGKRNNKSHSLCPRCGRHAFHKQKKRCAACAYPA 5966


  Database: ppolycephalum.fa
    Posted date:  Nov 24, 2011 12:51 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,225,353
Number of Sequences: 297657
Number of extensions: 976915
Number of successful extensions: 4411
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4404
length of query: 152
length of database: 106,339,350
effective HSP length: 103
effective length of query: 49
effective length of database: 75,680,679
effective search space: 3708353271
effective search space used: 3708353271
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
