TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: gniphandrodes.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338241305|gb|AFNH01002514.1| Gregarina niphandrodes asmbl.324...    28   0.93 
gi|338244917|gb|AFNH01000706.1| Gregarina niphandrodes asmbl.160...    27   2.7  
gi|338241528|gb|AFNH01002401.1| Gregarina niphandrodes asmbl.314...    27   3.5  
gi|338240841|gb|AFNH01002746.1| Gregarina niphandrodes asmbl.346...    26   4.6  
gi|338241111|gb|AFNH01002611.1| Gregarina niphandrodes asmbl.333...    26   4.6  
gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.335...    26   6.1  
gi|338241851|gb|AFNH01002239.1| Gregarina niphandrodes asmbl.299...    25   7.9  
gi|338243098|gb|AFNH01001616.1| Gregarina niphandrodes asmbl.242...    25   7.9  
gi|338245383|gb|AFNH01000474.1| Gregarina niphandrodes asmbl.142...    25   7.9  

>gi|338241305|gb|AFNH01002514.1| Gregarina niphandrodes asmbl.3247,
             whole genome shotgun sequence
          Length = 18434

 Score = 28.5 bits (62), Expect = 0.93
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 52    TGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGWPAFSESVGQDANIVRIVDRSHGMHR 111
             TG F    +K   +C  CG   F+   +  A CG   F  S+  D+    + +   G++ 
Sbjct: 14697 TGSFGLRNKKSHKMCERCGKHSFHIQKQRCASCGKIEFVVSIALDSQASPLAEHLVGLY- 14873

Query: 112   TEVRCKT 118
             T +R  T
Sbjct: 14874 TRLRRNT 14894


>gi|338244917|gb|AFNH01000706.1| Gregarina niphandrodes asmbl.16011,
             whole genome shotgun sequence
          Length = 22759

 Score = 26.9 bits (58), Expect = 2.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 75    NSDAKFWAGCGWPAFSESVGQDANIVRIVD 104
             N   +FW    WP+F+ SV   ++ V +V+
Sbjct: 15448 NGADRFWKSLAWPSFNSSVKSASSGVGVVE 15359


>gi|338241528|gb|AFNH01002401.1| Gregarina niphandrodes asmbl.3145,
            whole genome shotgun sequence
          Length = 10482

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 10   DVGLSKLKVEKNPKDVKQTEWKS 32
            +VG+S +K   NP + ++T W S
Sbjct: 7086 NVGISSIKTSANPSEQRRTRWGS 7018


>gi|338240841|gb|AFNH01002746.1| Gregarina niphandrodes asmbl.3464,
            whole genome shotgun sequence
          Length = 7492

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 62   GRYVCLCCGSELFNSDAKFWAGCGWPAFSESV 93
            G Y CLC GS   +  A+  +  GWPA ++ V
Sbjct: 5476 GSYSCLCSGS---HQPAQTISPHGWPAAAQQV 5390


>gi|338241111|gb|AFNH01002611.1| Gregarina niphandrodes asmbl.3338,
            whole genome shotgun sequence
          Length = 5150

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 49   TPHTGGFNDHFEKGRYVCLCC 69
            T +T   + H +K RY CLCC
Sbjct: 4142 TRNTVSRHPHSDKSRYHCLCC 4080


>gi|338241069|gb|AFNH01002632.1| Gregarina niphandrodes asmbl.3357,
             whole genome shotgun sequence
          Length = 19635

 Score = 25.8 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -3

Query: 123   LGHVFNDGPKETTGERYCINSVCM 146
             +G   ++GP E T +R+ + SVC+
Sbjct: 18910 IGEAMSEGPHEYTIDRWAVISVCL 18839


>gi|338241851|gb|AFNH01002239.1| Gregarina niphandrodes asmbl.2993,
            whole genome shotgun sequence
          Length = 4252

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 93   VGQDANIVRIVDRSHGMHRTEVRCKTCDAHLGHVFNDGPKETTGER 138
            +G      RI   + G HR+ + C+   A L +  N GP  T  +R
Sbjct: 3407 IGAHPTRPRIQQLTIGRHRSRLPCQHVYAGLRYDHNSGPTSTLRKR 3544


>gi|338243098|gb|AFNH01001616.1| Gregarina niphandrodes asmbl.2423,
           whole genome shotgun sequence
          Length = 1345

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 80  FWAGCGWPAFSESVGQDANIVRI 102
           FWAG G P    S  +D+NI+ +
Sbjct: 119 FWAGSG*PGLGVSRSKDSNILSL 187


>gi|338245383|gb|AFNH01000474.1| Gregarina niphandrodes asmbl.1424,
           whole genome shotgun sequence
          Length = 1484

 Score = 25.4 bits (54), Expect = 7.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 80  FWAGCGWPAFSESVGQDANIVRI 102
           FWAG G P    S  +D+NI+ +
Sbjct: 519 FWAGSG*PGLGVSRSKDSNILSL 587


  Database: gniphandrodes.fa
    Posted date:  Nov 22, 2011  6:51 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,603,227
Number of Sequences: 3680
Number of extensions: 63866
Number of successful extensions: 357
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of query: 152
length of database: 5,120,956
effective HSP length: 86
effective length of query: 66
effective length of database: 4,804,476
effective search space: 317095416
effective search space used: 317095416
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)
