TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000059_1.0 # Protein # Selenoprotein R  (SelR) #
Caenorhabditis elegans # Complete
         (152 letters)

Database: arara.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849257|gb|ADNL01001346.1| Astrammina rara contig01588, who...    23   2.1  
gi|330848658|gb|ADNL01001945.1| Astrammina rara contig02312, who...    23   2.8  
gi|330848678|gb|ADNL01001925.1| Astrammina rara contig02288, who...    23   2.8  
gi|330847858|gb|ADNL01002745.1| Astrammina rara contig03234, who...    23   3.7  
gi|330850409|gb|ADNL01000194.1| Astrammina rara contig00204, who...    23   3.7  
gi|330848047|gb|ADNL01002556.1| Astrammina rara contig03029, who...    22   4.8  
gi|330848142|gb|ADNL01002461.1| Astrammina rara contig02926, who...    22   4.8  
gi|330849777|gb|ADNL01000826.1| Astrammina rara contig00953, who...    22   4.8  
gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, who...    22   4.8  
gi|330848219|gb|ADNL01002384.1| Astrammina rara contig02843, who...    22   6.3  
gi|330849521|gb|ADNL01001082.1| Astrammina rara contig01268, who...    22   6.3  
gi|330849686|gb|ADNL01000917.1| Astrammina rara contig01067, who...    22   6.3  
gi|330849019|gb|ADNL01001584.1| Astrammina rara contig01878, who...    22   8.2  
gi|330849057|gb|ADNL01001546.1| Astrammina rara contig01835, who...    22   8.2  
gi|330850189|gb|ADNL01000414.1| Astrammina rara contig00452, who...    22   8.2  

>gi|330849257|gb|ADNL01001346.1| Astrammina rara contig01588, whole
           genome shotgun sequence
          Length = 225

 Score = 23.5 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 4   KKFRMEDVGLSKLKVEKNPKDVKQTEWK 31
           K+ + + V  SKL++  N +  K TEW+
Sbjct: 113 KQTKTDWVNRSKLRMSLNKQKSKDTEWE 196


>gi|330848658|gb|ADNL01001945.1| Astrammina rara contig02312, whole
           genome shotgun sequence
          Length = 219

 Score = 23.1 bits (48), Expect = 2.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 84  CGWPAFSESVGQDANIVRIVDR 105
           CGWP FS S+    +IVRI  R
Sbjct: 133 CGWPTFS-SLLLKIDIVRIDSR 71


>gi|330848678|gb|ADNL01001925.1| Astrammina rara contig02288, whole
           genome shotgun sequence
          Length = 224

 Score = 23.1 bits (48), Expect = 2.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 104 DRSHGMHRTEVRCKTCDAHL 123
           D  H +H+T+VRC     H+
Sbjct: 2   D*CHSLHQTDVRCPVICLHV 61


>gi|330847858|gb|ADNL01002745.1| Astrammina rara contig03234, whole
           genome shotgun sequence
          Length = 665

 Score = 22.7 bits (47), Expect = 3.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 125 HVFNDGPKETTGERYCINSVCMAFEKK 151
           HV+  GP+   G RY  +SV +A   K
Sbjct: 477 HVWTRGPEV*IGHRYHYSSVSIALVAK 557


>gi|330850409|gb|ADNL01000194.1| Astrammina rara contig00204, whole
           genome shotgun sequence
          Length = 1314

 Score = 22.7 bits (47), Expect = 3.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 47  TETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAG 83
           T TPH  G+ +  EKGR       S +F   A +W G
Sbjct: 649 TGTPHLQGYIEFKEKGR------PSSIFPKGA-YWVG 738


>gi|330848047|gb|ADNL01002556.1| Astrammina rara contig03029, whole
           genome shotgun sequence
          Length = 242

 Score = 22.3 bits (46), Expect = 4.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 14  SKLKVEKNPKDVKQTEWKSVLPNEVYRVARESGT 47
           S+L  ++  KD++   +K+     V+++ARE+ T
Sbjct: 115 SELIFQEMMKDIQSKTFKAGKTELVHKIAREANT 216


>gi|330848142|gb|ADNL01002461.1| Astrammina rara contig02926, whole
           genome shotgun sequence
          Length = 5925

 Score = 22.3 bits (46), Expect = 4.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 62  GRYVCLCCGSELFN 75
           GR +CLCC    F+
Sbjct: 186 GRCLCLCCACRAFD 145


>gi|330849777|gb|ADNL01000826.1| Astrammina rara contig00953, whole
           genome shotgun sequence
          Length = 843

 Score = 22.3 bits (46), Expect = 4.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 116 CKTCDAHLGHVFNDG 130
           C T   HL HVF+ G
Sbjct: 621 CNTSTTHLSHVFDVG 665


>gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, whole
            genome shotgun sequence
          Length = 9271

 Score = 22.3 bits (46), Expect = 4.8
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = +3

Query: 34   LPNEVYRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKFWAGCGW 86
            LP + Y VA +S TE         H +      LC GSE    D +    C W
Sbjct: 8547 LPTDAY-VAVDSPTEVGTC--VTSHLQ-----LLCVGSERIGEDVRVCPVCDW 8681


>gi|330848219|gb|ADNL01002384.1| Astrammina rara contig02843, whole
           genome shotgun sequence
          Length = 4052

 Score = 21.9 bits (45), Expect = 6.3
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 30  WKSVLPNEVYRVARESGT-ETPH 51
           W+ +LPN +Y +A +S   + PH
Sbjct: 950 WRLLLPNFLYSLAPDSALGQLPH 882


>gi|330849521|gb|ADNL01001082.1| Astrammina rara contig01268, whole
           genome shotgun sequence
          Length = 881

 Score = 21.9 bits (45), Expect = 6.3
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 125 HVFNDGPKETTGERYCINSVCMAFEK 150
           H  +DG      E  C++  C+ FE+
Sbjct: 151 HT*HDGFTRFAHEEVCMSPTCICFER 228


>gi|330849686|gb|ADNL01000917.1| Astrammina rara contig01067, whole
           genome shotgun sequence
          Length = 229

 Score = 21.9 bits (45), Expect = 6.3
 Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 4/17 (23%)
 Frame = -2

Query: 57  DHF----EKGRYVCLCC 69
           DHF    E  R VC+CC
Sbjct: 219 DHFMQDLEMSREVCICC 169


>gi|330849019|gb|ADNL01001584.1| Astrammina rara contig01878, whole
           genome shotgun sequence
          Length = 239

 Score = 21.6 bits (44), Expect = 8.2
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = -3

Query: 139 YCINSVCMAFEKKD 152
           YC+ ++C+ + K D
Sbjct: 114 YCVRTICIYYTKSD 73


>gi|330849057|gb|ADNL01001546.1| Astrammina rara contig01835, whole
           genome shotgun sequence
          Length = 229

 Score = 21.6 bits (44), Expect = 8.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 22  PKDVKQTEWKSVLPNEVYRVARESGTETPHTG 53
           PK     EW+S+   + +   RE     PH G
Sbjct: 221 PKHYHCLEWESLSWGDAHCFEREVYCPVPHVG 126


>gi|330850189|gb|ADNL01000414.1| Astrammina rara contig00452, whole
           genome shotgun sequence
          Length = 241

 Score = 21.6 bits (44), Expect = 8.2
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = -3

Query: 39  YRVARESGTETPHTGGFNDHFEKGRYVCLCCGSELFNSDAKF 80
           Y V R    E PH             VC+ CG  LF     F
Sbjct: 152 YNVCRHFLNELPH-------------VCMNCGIRLFGCGTSF 66


  Database: arara.fa
    Posted date:  Nov 22, 2011  5:42 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.319    0.134    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,437
Number of Sequences: 3231
Number of extensions: 4527
Number of successful extensions: 25
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of query: 152
length of database: 483,365
effective HSP length: 67
effective length of query: 85
effective length of database: 266,888
effective search space: 22685480
effective search space used: 22685480
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)
