TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: ppolyc.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig357  22014 25254                                                 67   4e-11
Contig9686  3426 8230                                                  63   7e-10
Contig4338  9345 18783                                                 48   3e-05
Contig16329  1472 1472                                                 40   0.008
Contig26994  871 871                                                   36   0.089

>Contig357  22014 25254
          Length = 25254

 Score = 67.4 bits (163), Expect = 4e-11
 Identities = 26/45 (57%), Positives = 33/45 (73%)
 Frame = +1

Query: 69    SAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVI 113
             ++  GEY  HK+ G+Y C  C TPL+KSETKFDSG GWP+F+  I
Sbjct: 24922 NSITGEYNKHKEQGVYTCAGCNTPLYKSETKFDSGCGWPAFYQAI 25056



 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 43    VVFSQQELRKRLTPLQYHVTQEKGTESAFEG 73
             V  + +E R +LTP Q+ V +EKGTE A  G
Sbjct: 24696 VNLTAEEWRVKLTPEQFRVLREKGTERAGTG 24788


>Contig9686  3426 8230
          Length = 8230

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 28/58 (48%), Positives = 35/58 (60%)
 Frame = -1

Query: 56   PLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVI 113
            PL +           F GEY  H + G Y C  C +PL+KSETKF+SGSGWP+F+D I
Sbjct: 4543 PLPFPSISISSISIIFLGEYDKHFEKGTYHCAGCDSPLYKSETKFNSGSGWPAFYDSI 4370



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 71   FEGEYTHHKDPGIYKCVVCGTPLFKS 96
            F GEY  H + G Y C  C +PL+K+
Sbjct: 4687 FLGEYDKHFEKGTYHCAGCDSPLYKT 4610


>Contig4338  9345 18783
          Length = 18783

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 24/58 (41%), Positives = 32/58 (55%)
 Frame = -3

Query: 80    DPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQ 137
             + G+Y C  C TPLF S  K       PSF   I    I ++DD+SYG+ R+ T+C Q
Sbjct: 15538 EDGLYTCSRCATPLFLSSDKLTGEHKKPSFSRSIQGTLI-YSDDYSYGLPRLLTTCKQ 15368


>Contig16329  1472 1472
          Length = 1472

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -2

Query: 117  AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGP 150
            A+   +D S+GM R E  C+ CG HLGH+F   P
Sbjct: 1330 ALKIEEDRSHGMLRTEIMCAACGGHLGHVFKVPP 1229


>Contig26994  871 871
          Length = 871

 Score = 36.2 bits (82), Expect = 0.089
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
 Frame = +3

Query: 78  HKDPGIYKCVVCGTPLFKSETKFDSGS----------------------GWPSFHDVINS 115
           + + G Y C  C  PLF S+ +    +                      G P F   +  
Sbjct: 45  YTEEGTYLCAGCLAPLFASQDQISPSNSTGTEKGKSLVATKGNLSVAKIGKPCFQCAVTP 224

Query: 116 EAITFTDDFSYGMHRVETSCSQ 137
            +++F +D+SYG+ R+  +C+Q
Sbjct: 225 ASLSFAEDYSYGICRILATCAQ 290


  Database: ppolyc.fa
    Posted date:  Nov 22, 2011  7:00 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,974,095
Number of Sequences: 297657
Number of extensions: 986879
Number of successful extensions: 4620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4618
length of query: 192
length of database: 106,339,350
effective HSP length: 107
effective length of query: 85
effective length of database: 74,490,051
effective search space: 6331654335
effective search space used: 6331654335
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
