TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: ddisco.fa 
           6 sequences; 33,943,072 total letters

Searching......done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromoso...    97   6e-21

>gi|93569069|gb|CM000154.2| Dictyostelium discoideum AX4 chromosome 5, whole
               genome shotgun sequence
          Length = 5125352

 Score = 97.4 bits (241), Expect = 6e-21
 Identities = 51/135 (37%), Positives = 66/135 (48%), Gaps = 28/135 (20%)
 Frame = +2

Query: 40      NCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETK 99
               N K+  S+ E R +LTP Q+ V +EKGTE    GEY  + + G+Y C  C TPLFKSE K
Sbjct: 5047718 NNKMNLSEDEWRVKLTPAQFKVLREKGTERPDSGEYNKNYEKGVYNCAACDTPLFKSEHK 5047897

Query: 100     FDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQC--------------------- 138
               F SG GWPSF+D I    +   D    G  R E  C++C                     
Sbjct: 5047898 FSSGCGWPSFYDSIPGALVLHEDPSLPGRPRTEICCAKCVSKKKRKKKEKKIHLY*YFI* 5048077

Query: 139     -------GAHLGHIF 146
                      G+H+GH+F
Sbjct: 5048078 IL*SII*GSHMGHVF 5048122



 Score = 26.9 bits (58), Expect = 9.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 160    NSAALSFTPADSSGTAEGGSGVA 182
              NS  LS  PA ++G A GG+GVA
Sbjct: 427290 NSLGLSPPPAANTGFANGGTGVA 427358



 Score = 26.9 bits (58), Expect = 9.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +2

Query: 93      LFKSETKFDSG---SGWPSFHDVINSEAITFTDDFS 125
               LF S+ +  SG   +GW SF D++  + I+ +D+FS
Sbjct: 2993948 LFTSDHETTSGKEFTGWSSF*DLMTIDPISTSDNFS 2994055


  Database: ddisco.fa
    Posted date:  Nov 22, 2011  6:14 PM
  Number of letters in database: 33,943,072
  Number of sequences in database:  6
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,037,945
Number of Sequences: 6
Number of extensions: 61146
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 11
length of query: 192
length of database: 11,314,357
effective HSP length: 95
effective length of query: 97
effective length of database: 11,313,787
effective search space: 1097437339
effective search space used: 1097437339
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
