TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000023_1.0 # Protein # Methionine-R-sufoxide reductase 3
(SelR3) # Homo sapiens # Complete
         (192 letters)

Database: alaiba.fa 
           3816 sequences; 32,740,139 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic cont...    71   5e-13
gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic cont...    71   5e-13
gi|325192933|emb|FR824543.1| Albugo laibachii Nc14, genomic cont...    31   0.47 
gi|325185083|emb|FR824119.1| Albugo laibachii Nc14, genomic cont...    30   1.4  
gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic cont...    28   3.0  
gi|325186899|emb|FR824168.1| Albugo laibachii Nc14, genomic cont...    28   4.0  
gi|325190171|emb|FR824296.1| Albugo laibachii Nc14, genomic cont...    28   5.2  
gi|325192104|emb|FR824433.1| Albugo laibachii Nc14, genomic cont...    27   6.8  

>gi|325181427|emb|FR824061.1| Albugo laibachii Nc14, genomic contig
             CONTIG_16_NC14_v4_210924_216
          Length = 210924

 Score = 70.9 bits (172), Expect = 5e-13
 Identities = 31/69 (44%), Positives = 43/69 (62%)
 Frame = +2

Query: 45    FSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGS 104
             ++ +E + RL P QY V + KGTE A  G Y    + G Y C  C  P++ S+TKFDSG 
Sbjct: 89129 WTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSKTKFDSGC 89308

Query: 105   GWPSFHDVI 113
             GWP+F+D +
Sbjct: 89309 GWPAFYDAV 89335



 Score = 35.4 bits (80), Expect = 0.025
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 140   AHLGHIFDDG--PRPTGKRYCINSAALSFTPADSS 172
             +H+GH+F +   P PT +R+C+NSA+L F   + S
Sbjct: 89515 SHMGHVFKNEGFPTPTDERHCVNSASLVFHAGELS 89619


>gi|325192474|emb|FR824473.1| Albugo laibachii Nc14, genomic contig
             CONTIG_430_NC14_v4_18487_112
          Length = 18487

 Score = 70.9 bits (172), Expect = 5e-13
 Identities = 31/69 (44%), Positives = 43/69 (62%)
 Frame = +1

Query: 45    FSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGS 104
             ++ +E + RL P QY V + KGTE A  G Y    + G Y C  C  P++ S+TKFDSG 
Sbjct: 11371 WTDKEWKGRLNPEQYRVLRLKGTELAGSGAYNKFYEEGTYLCAGCKAPVYTSKTKFDSGC 11550

Query: 105   GWPSFHDVI 113
             GWP+F+D +
Sbjct: 11551 GWPAFYDAV 11577



 Score = 35.4 bits (80), Expect = 0.025
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +3

Query: 140   AHLGHIFDDG--PRPTGKRYCINSAALSFTPADSS 172
             +H+GH+F +   P PT +R+C+NSA+L F   + S
Sbjct: 11757 SHMGHVFKNEGFPTPTDERHCVNSASLVFHAGELS 11861


>gi|325192933|emb|FR824543.1| Albugo laibachii Nc14, genomic contig
            CONTIG_507_NC14_v4_13379_204
          Length = 13379

 Score = 31.2 bits (69), Expect = 0.47
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -1

Query: 89   CGTPLFKSETKFDSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDD 148
            C +P  ++  +    S  P+    +  +AITF       M R  TS S C A +   FD+
Sbjct: 1589 CSSPRQRTRKRCSLNSFSPTSRSTLIEQAITFAQ-----MVRTNTSWSNCFARMRV*FDN 1425

Query: 149  GPRPTGKR 156
              +PT KR
Sbjct: 1424 YRKPTIKR 1401


>gi|325185083|emb|FR824119.1| Albugo laibachii Nc14, genomic contig
             CONTIG_74_NC14_v4_95633_241
          Length = 95633

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = -3

Query: 59    YHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGT-PLFKSETKFDSG-----SGWPSFHD 111
             Y+ +++ G E+   G+Y    + G+  C  CG   +   + +F SG     S WP+  D
Sbjct: 52374 YYYSEKDGCETCGLGKYLSTNEMGVLSCQTCGNGQVVVRQQEFGSGTFGAWSKWPAIID 52198


>gi|325180954|emb|FR824056.1| Albugo laibachii Nc14, genomic contig
              CONTIG_11_NC14_v4_227311_235
          Length = 227311

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -2

Query: 101    DSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHL 142
              ++   W + H  +   AITF       + RV+TSCS  G  +
Sbjct: 170283 NAAPSWQALHRQLERRAITFACT*GRLLLRVDTSCSHAGCQI 170158


>gi|325186899|emb|FR824168.1| Albugo laibachii Nc14, genomic contig
             CONTIG_123_NC14_v4_71167_256
          Length = 71167

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
 Frame = +3

Query: 43    VVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKD-------PGIYKCVVC 89
             +V     +R+  TP++ HV +   T    E     HK+        GI++C VC
Sbjct: 32172 IVSKISRIRQAKTPVKQHVKKSVKTPDLIETHIHEHKEGEPQALFHGIFRCEVC 32333


>gi|325190171|emb|FR824296.1| Albugo laibachii Nc14, genomic contig
             CONTIG_251_NC14_v4_37927_235
          Length = 37927

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
 Frame = +2

Query: 111   DVINSEAITFT-DDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKR------YCINSAA 163
             D + + +I  T + FS+  + V  SC++CG     I    P  T         + ++  +
Sbjct: 20606 DPMQAASICITPEQFSFQAYAVALSCTKCG---NSISSKKPMDTPSTQLQISFWIVSFMS 20776

Query: 164   LSFTPADSSGTAEGGSGVASPAQADKAE 191
             L F   DS G ++G +   S +  ++A+
Sbjct: 20777 LCFYYFDSKGVSDGDTRTYSQSNLERAD 20860


>gi|325192104|emb|FR824433.1| Albugo laibachii Nc14, genomic contig
            CONTIG_390_NC14_v4_22242_153
          Length = 22242

 Score = 27.3 bits (59), Expect = 6.8
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 101  DSGSGWPSFHDVINSEAITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRP 152
            ++   W + H  +   A+TF       + RV+TSC   G     I   GP P
Sbjct: 3033 NASPSWQAAHR*LERRAVTFACT*GRLLLRVDTSCGHAGC---QILSPGPAP 3179


  Database: alaiba.fa
    Posted date:  Nov 22, 2011  5:53 PM
  Number of letters in database: 32,740,139
  Number of sequences in database:  3816
  
Lambda     K      H
   0.316    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,016,979
Number of Sequences: 3816
Number of extensions: 109315
Number of successful extensions: 432
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 182
Number of HSP's gapped (non-prelim): 322
length of query: 192
length of database: 10,913,379
effective HSP length: 94
effective length of query: 98
effective length of database: 10,554,675
effective search space: 1034358150
effective search space used: 1034358150
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
