TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: ppolycephalum.fa 
           297,657 sequences; 319,018,052 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Contig9686  3426 8230                                                  54   6e-07
Contig357  22014 25254                                                 50   6e-06
Contig16329  1472 1472                                                 36   0.12 
Contig1348  18401 25745                                                33   0.62 
Contig4023  5957 10009                                                 32   1.8  
Contig4338  9345 18783                                                 32   2.3  
Contig276047  480 480                                                  31   3.1  
Contig48563  1986 1986                                                 30   6.8  
Contig4155  9403 28381                                                 30   6.8  
Contig661  22245 24465                                                 30   6.8  
Contig928  19958 37878                                                 30   8.9  

>Contig9686  3426 8230
          Length = 8230

 Score = 53.5 bits (127), Expect = 6e-07
 Identities = 22/42 (52%), Positives = 29/42 (69%)
 Frame = -1

Query: 92   FSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 133
            F G Y  + E G YHC  CDSPL+ SE K+ SG+GWP+F ++
Sbjct: 4498 FLGEYDKHFEKGTYHCAGCDSPLYKSETKFNSGSGWPAFYDS 4373



 Score = 32.7 bits (73), Expect = 1.1
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = -1

Query: 68   KSEWQKKLTPEQFYVTREKGTE 89
            + +W+ KLTPEQ+ V REK TE
Sbjct: 7189 EEQWKSKLTPEQYEVLREKETE 7124



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 92   FSGIYLNNKEAGMYHCVCCDSPLFSS 117
            F G Y  + E G YHC  CDSPL+ +
Sbjct: 4687 FLGEYDKHFEKGTYHCAGCDSPLYKT 4610


>Contig357  22014 25254
          Length = 25254

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 20/41 (48%), Positives = 29/41 (70%)
 Frame = +1

Query: 93    SGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA 133
             +G Y  +KE G+Y C  C++PL+ SE K+ SG GWP+F +A
Sbjct: 24931 TGEYNKHKEQGVYTCAGCNTPLYKSETKFDSGCGWPAFYQA 25053



 Score = 40.0 bits (92), Expect = 0.007
 Identities = 19/30 (63%), Positives = 21/30 (70%)
 Frame = +3

Query: 66    LAKSEWQKKLTPEQFYVTREKGTEPPFSGI 95
             L   EW+ KLTPEQF V REKGTE   +GI
Sbjct: 24702 LTAEEWRVKLTPEQFRVLREKGTERAGTGI 24791


>Contig16329  1472 1472
          Length = 1472

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 144  TGILR-RLDTSLGSARTEVVCKQCEAHLGHVFPDGP 178
            TG L+   D S G  RTE++C  C  HLGHVF   P
Sbjct: 1336 TGALKIEEDRSHGMLRTEIMCAACGGHLGHVFKVPP 1229


>Contig1348  18401 25745
          Length = 25745

 Score = 33.5 bits (75), Expect = 0.62
 Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
 Frame = -1

Query: 63   ELPLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLN-----NKEAGMYHCVCCDSPLFSS 117
            +LP A     KK+ P++   +R K  EP     Y++     NK+ G   CVC  SP  SS
Sbjct: 3581 KLPQASKPQDKKVKPQR---SRLKSKEPDQHTSYVDAPVPTNKQTGTRSCVCGYSPALSS 3411

Query: 118  EKKYCSGTGWPSFSEAHGTSGSDESHT 144
                 S T W   +   G S   ES T
Sbjct: 3410 ---*LSTTPWLGDTLKQGPSNEMESWT 3339


>Contig4023  5957 10009
          Length = 10009

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -3

Query: 112  SPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQC 166
            S  FS  +  CS    PSF+E   +S S  S + +   L  S+  +R+  VC  C
Sbjct: 3485 STCFSKSRTACSSLASPSFAERASSSSSSVS*SCLSNSLFASVAFSRSSRVCCNC 3321


>Contig4338  9345 18783
          Length = 18783

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -3

Query: 101   EAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESHTGILRRLDTSLGSART 159
             E G+Y C  C +PLF S  K       PSFS +  GT    + ++  L RL T+    R+
Sbjct: 15538 EDGLYTCSRCATPLFLSSDKLTGEHKKPSFSRSIQGTLIYSDDYSYGLPRLLTTCKQVRS 15359

Query: 160   EVV 162
              ++
Sbjct: 15358 PIL 15350


>Contig276047  480 480
          Length = 480

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 63  ELPLAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLN-----NKEAGMYHCVCCDSPLFSS 117
           +LP A     KK+ P++   +R K  EP     Y++     NK+ G   CVC  SP  SS
Sbjct: 230 KLPQASKPQDKKVKPQR---SRLKSKEPDQHTSYVDAPVPTNKQTGTRSCVCGYSPALSS 400


>Contig48563  1986 1986
          Length = 1986

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 88   TEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYC 122
            T P F G+Y  N E   Y C   D  LF S K  C
Sbjct: 1479 TRPSFCGLYFCNSE*VKYTCAKLDWYLFVSNKNIC 1375


>Contig4155  9403 28381
          Length = 28381

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 107   CVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVC 163
             C CC+S    S   +CSG+G        G+  S  S  G  R      G++  EV C
Sbjct: 17171 CSCCESGSIWSNSNFCSGSGCRGSGTNSGSWASCTSSVGKGRSSPK*SGNSE*EVGC 17001


>Contig661  22245 24465
          Length = 24465

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +1

Query: 88   TEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYC 122
            T P F G+Y  N E   Y C   D  LF S K  C
Sbjct: 6349 TRPSFCGLYFCNSE*VKYTCAKLDWYLFVSNKNIC 6453


>Contig928  19958 37878
          Length = 37878

 Score = 29.6 bits (65), Expect = 8.9
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +1

Query: 85    EKGTEPPFSGIY---LNNKEAGMYHCVCCDSPLFSSEKK 120
             +KGT+   + IY   L+N     +HC+CC + L+   +K
Sbjct: 16168 QKGTDTTGTNIYCPFLSNTPNSSHHCMCCANTLYLQAQK 16284


  Database: ppolycephalum.fa
    Posted date:  Nov 24, 2011 12:51 PM
  Number of letters in database: 319,018,052
  Number of sequences in database:  297,657
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,622,251
Number of Sequences: 297657
Number of extensions: 1188115
Number of successful extensions: 5716
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5716
length of query: 199
length of database: 106,339,350
effective HSP length: 108
effective length of query: 91
effective length of database: 74,192,394
effective search space: 6751507854
effective search space used: 6751507854
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
