TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: pcapsici.fa 
           917 sequences; 64,023,748 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PHYCAscaffold_33                                                       73   3e-16
PHYCAscaffold_4                                                        30   1.6  
PHYCAscaffold_76                                                       30   2.1  
PHYCAscaffold_5                                                        30   2.1  
PHYCAscaffold_47                                                       30   2.8  
PHYCAscaffold_18                                                       29   3.6  
PHYCAscaffold_82                                                       29   4.7  
PHYCAscaffold_11                                                       28   6.2  
PHYCAscaffold_61                                                       28   8.1  
PHYCAscaffold_59                                                       28   8.1  
PHYCAscaffold_2                                                        28   8.1  

>PHYCAscaffold_33
          Length = 640966

 Score = 72.8 bits (177), Expect(2) = 3e-16
 Identities = 39/115 (33%), Positives = 62/115 (53%), Gaps = 11/115 (9%)
 Frame = -2

Query: 66     LAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT 125
              L+  EW+++LTP QF V R KGTE   +G Y  +KE G+Y C  C +P+++S  K+ SG 
Sbjct: 179367 LSDEEWKQRLTPMQFQVLRLKGTERAGTGEYNKHKETGVYVCAGCKTPVYTSTTKFDSGC 179188

Query: 126    GWPSFSEAHGTS-----GSDESHTG------ILRRLDTSLGSARTEVVCKQCEAH 169
              GWP+F +A   +       D  +        +L +        RTE++C +C+ +
Sbjct: 179187 GWPAFYDAIPGAIKVV*SKDLFYFDSIY*ILVLLQAVADADGRRTEIMCAKCDGY 179023



 Score = 30.0 bits (66), Expect(2) = 3e-16
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 168    AHLGHVFPDGPG---PNGQRFCINSVALKF 194
              +H+GHVF  G G   P  +R C+NSV+L F
Sbjct: 178963 SHMGHVFK-GEGFETPTDERHCVNSVSLVF 178877


>PHYCAscaffold_4
          Length = 1587695

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 29/117 (24%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
 Frame = +1

Query: 91     PFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSF--------SEAHGTSGSDES 142
              P   ++L +  A    C CC S   S+  + C  T  P          SE  G+    E 
Sbjct: 823192 PSGSLWLRSPAATTTKCCCCSSL*QSAPLRECRSTPAPQTSTYAPAH*SETQGSFECRE* 823371

Query: 143    HTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH 199
              HT   R    S    R     + CE              G++ C+ S    F PR H
Sbjct: 823372 HTSRPRTTCCSRPCCRRRCR*RGCERF----------QEGEQCCLKSSGSTFGPRAH 823512


>PHYCAscaffold_76
          Length = 209683

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 103    GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTG 145
              G  HC CC +P     +  C G  W   S  H   GS   H+G
Sbjct: 140350 GGRHCCCC*TPGGRRRRGEC*GRSWFLASCIHEPLGSGRPHSG 140222


>PHYCAscaffold_5
          Length = 1593284

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 129     SFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLG 171
               S+ +A G   S++ H G +      LG+ +  V C+  +AH G
Sbjct: 1092226 SYEDAQGDDSSEDKHEGDMHEGPGDLGAEQNGVRCEDGQAHRG 1092354


>PHYCAscaffold_47
          Length = 556112

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 25/90 (27%), Positives = 37/90 (41%)
 Frame = +1

Query: 66     LAKSEWQKKLTPEQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT 125
              L+ S W  ++ P     +   GT+ P   ++L     G   C C  +PL   +     G 
Sbjct: 209425 LSCSRWDCRVIPVDSV*S---GTKAPLKELFLRRGA*G---CACGCNPLSRVKLSSDPGV 209586

Query: 126    GWPSFSEAHGTSGSDESHTGILRRLDTSLG 155
              GW S     G  GS  +   +LR  +T LG
Sbjct: 209587 GWLSLPARKGLCGS-PNDVRLLRSKETVLG 209673


>PHYCAscaffold_18
          Length = 984210

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 106    HCVCCDSPLFSSEKKYCSGT-GWPSFSEAHGTSGSDESHTGILR 148
              +C CC SP++ S +  C  T  WP F E   TS    S   +LR
Sbjct: 979105 YCACCFSPIWLS*RFSCVRTWKWPRFLEWW*TSSRSCSRALVLR 979236


>PHYCAscaffold_82
          Length = 207552

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = +3

Query: 135    GTSGSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSV 190
              G++G  +    +  R  T +G+++  + C      L  + P+   P G + C+NS+
Sbjct: 180573 GSAGKLQHDLSVGSRRFTPVGASKRRLPCHCVHRDLDALAPEEINPQGDQSCVNSI 180740


>PHYCAscaffold_11
          Length = 1076090

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 95     IYLNNKEAGMYHCVCCDSPLFSSEKKYCSGT-GWPSFSEAHGTSGSDESHTGILR 148
              + L++     ++C CC S ++ S +  C  T  WP F E   TS    S   +LR
Sbjct: 849439 LVLSSHSTSSWYCACCFSRIWLS*RFSCVRTWKWPRFLEWW*TSSRSCSRALVLR 849275


>PHYCAscaffold_61
          Length = 347729

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 109    CCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESHTGILR 148
              CC SP     ++ C G GW     A G++GS  + T  +R
Sbjct: 142569 CCRSPASRR*RRCCHGCGW----GARGSAGS*RNATNCIR 142676


>PHYCAscaffold_59
          Length = 390573

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = -2

Query: 120    KYCSGTGWPSFSEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQCE 167
              KYCS   W          G+D S T ILR   T   +  T   C  CE
Sbjct: 230321 KYCSTNSW--------VGGTDNSFTQILRTSPTGQRNCITLKRCTSCE 230202


>PHYCAscaffold_2
          Length = 1925921

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 140     DESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGP 180
               +++H G+  RLD S    RT V C Q        +P  P P
Sbjct: 1278096 EQNHAGMTARLDQSAACTRTTVSCAQAR------WPHSPDP 1277992


  Database: pcapsici.fa
    Posted date:  Nov 24, 2011 12:37 PM
  Number of letters in database: 64,023,748
  Number of sequences in database:  917
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,127,913
Number of Sequences: 917
Number of extensions: 250594
Number of successful extensions: 1466
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 806
length of query: 199
length of database: 21,341,249
effective HSP length: 100
effective length of query: 99
effective length of database: 21,249,549
effective search space: 2103705351
effective search space used: 2103705351
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
