TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000022_1.0 # Protein # Methionine-R-sufoxide reductase 2
(SelR2) # Homo sapiens # Complete
         (199 letters)

Database: arara.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330848444|gb|ADNL01002159.1| Astrammina rara contig02582, who...    24   2.4  
gi|330847439|gb|ADNL01003164.1| Astrammina rara contig02816, who...    23   3.1  
gi|330847436|gb|ADNL01003167.1| Astrammina rara contig02837, who...    22   9.1  

>gi|330848444|gb|ADNL01002159.1| Astrammina rara contig02582, whole
           genome shotgun sequence
          Length = 479

 Score = 23.9 bits (50), Expect = 2.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 108 VCCDSPLFSSEKKY 121
           +CC +PLF S K Y
Sbjct: 407 MCCSTPLFGSPKYY 366


>gi|330847439|gb|ADNL01003164.1| Astrammina rara contig02816, whole
           genome shotgun sequence
          Length = 531

 Score = 23.5 bits (49), Expect = 3.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 81  YVTREKGTEPPFSGIYLNNKEAGMYHCVC 109
           + T   GT  P   IYL+N+   ++H VC
Sbjct: 224 FCTPSVGTAHP--EIYLSNRYNSLFHAVC 144


>gi|330847436|gb|ADNL01003167.1| Astrammina rara contig02837, whole
           genome shotgun sequence
          Length = 217

 Score = 21.9 bits (45), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 122 CSGTGWPSFSEAHGT 136
           CSG+ WP+  +  G+
Sbjct: 128 CSGSAWPTTGDRRGS 84


  Database: arara.fa
    Posted date:  Nov 22, 2011  5:42 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.316    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,273
Number of Sequences: 3231
Number of extensions: 4425
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 199
length of database: 483,365
effective HSP length: 70
effective length of query: 129
effective length of database: 257,195
effective search space: 33178155
effective search space used: 33178155
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)
