TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: sarcti.fa 
           15,618 sequences; 121,588,341 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

supercont1.1467 of Sphaeroforma arctica JP610                          34   0.055
supercont1.58 of Sphaeroforma arctica JP610                            30   1.0  
supercont1.265 of Sphaeroforma arctica JP610                           28   3.0  
supercont1.142 of Sphaeroforma arctica JP610                           28   3.9  
supercont1.6872 of Sphaeroforma arctica JP610                          28   5.1  
supercont1.2905 of Sphaeroforma arctica JP610                          28   5.1  
supercont1.412 of Sphaeroforma arctica JP610                           28   5.1  
supercont1.55 of Sphaeroforma arctica JP610                            27   6.7  
supercont1.230 of Sphaeroforma arctica JP610                           27   8.7  
supercont1.73 of Sphaeroforma arctica JP610                            27   8.7  
supercont1.67 of Sphaeroforma arctica JP610                            27   8.7  

>supercont1.1467 of Sphaeroforma arctica JP610
          Length = 14738

 Score = 34.3 bits (77), Expect = 0.055
 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +3

Query: 35   SKYAHSSPWPAFTETIHA--DSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPGQS 92
            S Y  S PW     +I    D +  R    R E   + C +CG  LGH F  +       
Sbjct: 2457 SVYRASQPWCTVAHSIFIFIDPIIYRMGLKRIE---IMCSQCGGHLGHVFEGEKFTDTNE 2627

Query: 93   RFXIFSSSLKFVPKGK 108
            R  + S S+KFV KGK
Sbjct: 2628 RHCVNSVSIKFV-KGK 2672


>supercont1.58 of Sphaeroforma arctica JP610
          Length = 182423

 Score = 30.0 bits (66), Expect = 1.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 8      GGEVFQNHFEPGVYVCAKCGYELFSSRSK 36
              G  +FQ+ FEP   +CA   Y+LF S  K
Sbjct: 101855 GINLFQDRFEPNYTICACALYDLFDSHPK 101769


>supercont1.265 of Sphaeroforma arctica JP610
          Length = 98067

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = -1

Query: 1     MSFCSFFGGEVFQNHFEPGVYVCAKCG----YELFSSRSK---YAHSSPWPAFTETI 50
             + F   FG + F + F+P VY+C          +FSSR      A  + W A+   +
Sbjct: 25278 LQFQFLFGVQTFSHRFKPSVYICPNTNGLAPVNIFSSRPPSCICARRARWRAYRRKV 25108


>supercont1.142 of Sphaeroforma arctica JP610
          Length = 135076

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 19     GVYVCAKCGYELFSSRSKYAHS 40
              G +VC +CGY+L  S   Y H+
Sbjct: 112223 GAWVCIRCGYQLAWSTHTYMHT 112158


>supercont1.6872 of Sphaeroforma arctica JP610
          Length = 1554

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 20  VYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNR 63
           +++C  C Y + S    Y H   +P F  + HA SV +    +R
Sbjct: 372 IHIC*WCSYLVISEFQ*YGHVQYYPEFNPSNHA*SVCQHRSIDR 503


>supercont1.2905 of Sphaeroforma arctica JP610
          Length = 4511

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 32   SSRSKYAHSSPWPAF-TETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLND 85
            S  ++Y H + WP   T+T   DSV     H R+    V       G GH   +D
Sbjct: 958  SRTTRYVHRA*WPHNDTKTSARDSVGLTYAHTRTRVCVVCAQTAVRGCGHNASSD 1122


>supercont1.412 of Sphaeroforma arctica JP610
          Length = 76468

 Score = 27.7 bits (60), Expect = 5.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 3     FCSFFGGEVFQNHFEPGV 20
             F  FFGG  F NH++PG+
Sbjct: 72491 FVLFFGGGFFLNHYKPGL 72544


>supercont1.55 of Sphaeroforma arctica JP610
          Length = 185587

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 69     VSCGKCGNGLGHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETSASQG 115
              V+C +C +G GH+ L+   + G  +  +  +   FV  G E +  +G
Sbjct: 144545 VNCRRCSSGKGHQRLDRQVRGGSGKDRVGIAVKHFVVLGLEVTGVRG 144685


>supercont1.230 of Sphaeroforma arctica JP610
          Length = 108496

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 7     FGGEVFQNHFEPGVYVCAKCGY 28
             FGGE  Q+H    VY C + GY
Sbjct: 48352 FGGEQIQSHSRGVVYYCLQYGY 48417


>supercont1.73 of Sphaeroforma arctica JP610
          Length = 175507

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 67   LKVSCGKCGNGLGHEFLNDGPKPG 90
            LK+SCGK G    H+F     +PG
Sbjct: 1927 LKLSCGKTGTHNSHKFSRGPARPG 1856


>supercont1.67 of Sphaeroforma arctica JP610
          Length = 179553

 Score = 26.9 bits (58), Expect = 8.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 41     SPWPAFTETIHADSVAKRPEHNRSEALKVSCGKC 74
              +P+     T H+ +++  P H+RS+A ++  G C
Sbjct: 165352 APYAPQATTRHSPALSPTPYHSRSQASRLGLGPC 165251


  Database: sarcti.fa
    Posted date:  Nov 22, 2011  6:51 PM
  Number of letters in database: 121,588,341
  Number of sequences in database:  15,618
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,467,889
Number of Sequences: 15618
Number of extensions: 436173
Number of successful extensions: 1689
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1689
length of query: 116
length of database: 40,529,447
effective HSP length: 90
effective length of query: 26
effective length of database: 39,123,827
effective search space: 1017219502
effective search space used: 1017219502
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
