TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: gnipha.fa 
           3680 sequences; 15,362,869 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|338243220|gb|AFNH01001555.1| Gregarina niphandrodes asmbl.236...    28   0.85 
gi|338239517|gb|AFNH01003407.1| Gregarina niphandrodes asmbl.750...    27   1.4  
gi|338240793|gb|AFNH01002769.1| Gregarina niphandrodes asmbl.348...    27   1.9  
gi|338242349|gb|AFNH01001990.1| Gregarina niphandrodes asmbl.276...    27   1.9  
gi|338239964|gb|AFNH01003184.1| Gregarina niphandrodes asmbl.55,...    26   2.5  
gi|338241211|gb|AFNH01002561.1| Gregarina niphandrodes asmbl.329...    26   2.5  
gi|338241380|gb|AFNH01002475.1| Gregarina niphandrodes asmbl.321...    26   2.5  
gi|338242770|gb|AFNH01001780.1| Gregarina niphandrodes asmbl.257...    26   3.2  
gi|338240450|gb|AFNH01002941.1| Gregarina niphandrodes asmbl.364...    25   4.2  
gi|338240779|gb|AFNH01002776.1| Gregarina niphandrodes asmbl.349...    25   4.2  
gi|338242329|gb|AFNH01002000.1| Gregarina niphandrodes asmbl.277...    25   4.2  
gi|338243248|gb|AFNH01001541.1| Gregarina niphandrodes asmbl.235...    25   4.2  
gi|338240485|gb|AFNH01002923.1| Gregarina niphandrodes asmbl.362...    25   5.5  
gi|338240575|gb|AFNH01002878.1| Gregarina niphandrodes asmbl.358...    25   5.5  
gi|338240785|gb|AFNH01002773.1| Gregarina niphandrodes asmbl.349...    25   5.5  
gi|338241799|gb|AFNH01002265.1| Gregarina niphandrodes asmbl.301...    25   5.5  
gi|338240426|gb|AFNH01002953.1| Gregarina niphandrodes asmbl.365...    25   7.2  
gi|338240901|gb|AFNH01002716.1| Gregarina niphandrodes asmbl.343...    25   7.2  
gi|338241099|gb|AFNH01002617.1| Gregarina niphandrodes asmbl.334...    25   7.2  
gi|338242391|gb|AFNH01001969.1| Gregarina niphandrodes asmbl.274...    25   7.2  
gi|338242395|gb|AFNH01001967.1| Gregarina niphandrodes asmbl.274...    25   7.2  
gi|338243156|gb|AFNH01001587.1| Gregarina niphandrodes asmbl.239...    25   7.2  
gi|338240467|gb|AFNH01002932.1| Gregarina niphandrodes asmbl.363...    24   9.4  
gi|338241644|gb|AFNH01002343.1| Gregarina niphandrodes asmbl.308...    24   9.4  

>gi|338243220|gb|AFNH01001555.1| Gregarina niphandrodes asmbl.2368,
            whole genome shotgun sequence
          Length = 11263

 Score = 27.7 bits (60), Expect = 0.85
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +3

Query: 16   FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVS 70
            F PG    + C Y L  S S   +S  WP +  T+   ++A     + S AL+ +
Sbjct: 1125 FTPGTPCGSSCRYSLIKSSSDTPNS--WPTWPITLPLKAIASISASHSSSALRTA 1283


>gi|338239517|gb|AFNH01003407.1| Gregarina niphandrodes asmbl.750,
           whole genome shotgun sequence
          Length = 2479

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 61  HNRSEALKVSCGKCGN-GLGHEFLNDGPKPGQSRFXIFSSSL 101
           +N    + V   KCG+ G   + LNDGPK  +S F ++ +S+
Sbjct: 333 NNGMACVAVRTWKCGSVGSVWQLLNDGPKSLRSCFPLYIASV 458


>gi|338240793|gb|AFNH01002769.1| Gregarina niphandrodes asmbl.3488,
            whole genome shotgun sequence
          Length = 7190

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 61   HNRSEALKVSCGKCGNGLGHEFLNDG 86
            H+  E   V CG CG  + H+ L+ G
Sbjct: 2153 HHGRELCGVRCGTCGRNVPHQLLSAG 2230


>gi|338242349|gb|AFNH01001990.1| Gregarina niphandrodes asmbl.2766,
            whole genome shotgun sequence
          Length = 14508

 Score = 26.6 bits (57), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 18   PGVYVCAKCGYELFSSRSKY 37
            P V    KCGY+LFS   K+
Sbjct: 8330 PAVLAAQKCGYQLFSKCKKF 8389


>gi|338239964|gb|AFNH01003184.1| Gregarina niphandrodes asmbl.55,
           whole genome shotgun sequence
          Length = 1080

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 18  PGVYVCAKCGYELFSSRSKYAHSSPWP 44
           PGV+ CA CG + + +  +    SP+P
Sbjct: 197 PGVWCCAVCGSDWWRADHEDVSRSPYP 117


>gi|338241211|gb|AFNH01002561.1| Gregarina niphandrodes asmbl.3290,
           whole genome shotgun sequence
          Length = 10230

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
 Frame = +1

Query: 27  GYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCG---KCGNGLG 79
           G+E  S RSK A   PW     +    S    PE+         CG    CG G G
Sbjct: 925 GWEQRSCRSKTAKKYPWSIQAVSCQTQSEGGIPEYPGRGHRSAECG*GEACGPGGG 1092


>gi|338241380|gb|AFNH01002475.1| Gregarina niphandrodes asmbl.3211,
            whole genome shotgun sequence
          Length = 8406

 Score = 26.2 bits (56), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 75   GNGLGHEFLNDGPKPGQSR 93
            G GLGH F+  G  PG  R
Sbjct: 3341 GRGLGHAFVRSGSNPGCER 3285


>gi|338242770|gb|AFNH01001780.1| Gregarina niphandrodes asmbl.2575,
           whole genome shotgun sequence
          Length = 3360

 Score = 25.8 bits (55), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 49  TIHADSVAKRPEHNRSEALKVSCGKC 74
           T+ A   A  P+H RS  + ++ GKC
Sbjct: 279 TLPASQPASPPDHRRSTVVPLTTGKC 356


>gi|338240450|gb|AFNH01002941.1| Gregarina niphandrodes asmbl.3645,
             whole genome shotgun sequence
          Length = 42255

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 32    SSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKC 74
             +SRS+    SP P  T  +H+D + + P   R+  L  + G C
Sbjct: 29949 ASRSRLRQRSPPPQLT--LHSDQLDQGPTWQRARHLSRTHGAC 29827


>gi|338240779|gb|AFNH01002776.1| Gregarina niphandrodes asmbl.3495,
            whole genome shotgun sequence
          Length = 5789

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 40   SSPWPAFTETIHADSVAKRPEHNRSEALKV 69
            ++PW  F E +  D V KRP +     L V
Sbjct: 3073 TTPWILFPERVFGDDVEKRPGYGEEIELWV 2984


>gi|338242329|gb|AFNH01002000.1| Gregarina niphandrodes asmbl.2775,
            whole genome shotgun sequence
          Length = 25198

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 12   FQNHFEPGVYVCAKCGYEL 30
            F +HF+PG++V    G EL
Sbjct: 9301 FMDHFQPGIFVDVHSGNEL 9245


>gi|338243248|gb|AFNH01001541.1| Gregarina niphandrodes asmbl.2355,
            whole genome shotgun sequence
          Length = 6209

 Score = 25.4 bits (54), Expect = 4.2
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 13   QNHFEPGVYVCAKCGYELFSSRSKYAHSSPW 43
            ++H EPG     KCG   F      A S PW
Sbjct: 1186 RHHTEPGTTRDTKCGVSQFRIWDTTATSFPW 1278


>gi|338240485|gb|AFNH01002923.1| Gregarina niphandrodes asmbl.3628,
             whole genome shotgun sequence
          Length = 30596

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 55    VAKRPEHNRSEALKVSCGKCGNG 77
             + K+P  +R+  L+++CG+  NG
Sbjct: 16670 MTKQPTSDRTTRLRMACGRVANG 16738


>gi|338240575|gb|AFNH01002878.1| Gregarina niphandrodes asmbl.3588,
            whole genome shotgun sequence
          Length = 9609

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 25/86 (29%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
 Frame = -2

Query: 34   RSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKC-GNGLGHEFLNDGPK--PG 90
            RS+  H  P      T    SV   PEH R E      G C     G   +  GP+   G
Sbjct: 2351 RSEEGHPGPGSRTGGTTRCRSVRSEPEHYRIEHAVEHGGSCWPEARGTRIVPPGPRVFRG 2172

Query: 91   QSRFXIFSSSLKFVPKGKETSASQGH 116
             SR       L  VPK         H
Sbjct: 2171 LSRRQ*VV*LLSHVPKEASPGRHNDH 2094


>gi|338240785|gb|AFNH01002773.1| Gregarina niphandrodes asmbl.3492,
            whole genome shotgun sequence
          Length = 21532

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = +2

Query: 31   FSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGPKPG 90
            FSSR    H+   P  + T+ A +   R E N   A+  S  K     GH      PKPG
Sbjct: 4514 FSSRQT-GHTLLPPTPSRTVTAPT---RRETNT--AMNTSTPKRSASTGHTSTRTNPKPG 4675

Query: 91   QSRFXIFSSSLKFVPKGKETSASQG 115
             S   + +  +     G E + ++G
Sbjct: 4676 ASTEGVTTEIVTTEGAGTEGAGTEG 4750


>gi|338241799|gb|AFNH01002265.1| Gregarina niphandrodes asmbl.3015,
            whole genome shotgun sequence
          Length = 1472

 Score = 25.0 bits (53), Expect = 5.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 19   GVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKR-PEHNRSEALKVSCGK 73
            G Y     G   F SRS+   + P PA   T+ A   + R P H R  A +  CG+
Sbjct: 1375 GRYFHLSRGRPWFDSRSRRKTACPTPASLATLPATPRSPRNPYHPRPHATR-GCGR 1211


>gi|338240426|gb|AFNH01002953.1| Gregarina niphandrodes asmbl.3656,
             whole genome shotgun sequence
          Length = 23683

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 9/48 (18%)
 Frame = +2

Query: 43    WPAFTE--TIHADSVAKRPEHNR-------SEALKVSCGKCGNGLGHE 81
             WP      T+H     +RPEH R       S  L  SC  CG    HE
Sbjct: 18179 WPLAESYLTVHEP---RRPEHGRERQLPRRSRPLGASCSPCGRP*PHE 18313


>gi|338240901|gb|AFNH01002716.1| Gregarina niphandrodes asmbl.3435,
             whole genome shotgun sequence
          Length = 17065

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +3

Query: 8     GGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPW 43
             GG  F    EPG    A+CG+          H S W
Sbjct: 14511 GGGTFGAPVEPGAATEAECGHPAHRVPLPLGHDSVW 14618


>gi|338241099|gb|AFNH01002617.1| Gregarina niphandrodes asmbl.3343,
            whole genome shotgun sequence
          Length = 22181

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +1

Query: 13   QNHFEPGVYVCAKCGYELFSSRSKYAHSSPW 43
            +N  +PG  +C K    +   R   +H SPW
Sbjct: 7801 KNDCKPGTNICRKSPDGIRFKRDAASHLSPW 7893


>gi|338242391|gb|AFNH01001969.1| Gregarina niphandrodes asmbl.2747,
            whole genome shotgun sequence
          Length = 10442

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 7    FGGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSP 42
            FG  V +N    G  VC+ CG    S +  Y HS P
Sbjct: 6821 FGSRVHRNGCPWGSAVCSICGLRA-SRQVDYTHSIP 6717


>gi|338242395|gb|AFNH01001967.1| Gregarina niphandrodes asmbl.2745,
           whole genome shotgun sequence
          Length = 8428

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
 Frame = +1

Query: 49  TIHADSVAKRPEHNRSEALKVSCGKCGNGL-------GHEFLNDGPKPGQSRFXIFSSS 100
           T+H   V     H   + ++   G+CG  L        H F      P  SRF +  SS
Sbjct: 925 TVHTVEVHTVRVHTNRDTMRSQAGRCGRCLVSLGVVQDHRF*RQYGTPLASRFGVLLSS 1101


>gi|338243156|gb|AFNH01001587.1| Gregarina niphandrodes asmbl.2397,
            whole genome shotgun sequence
          Length = 5609

 Score = 24.6 bits (52), Expect = 7.2
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +3

Query: 34   RSKYAHSSPWPAFTETIHADSVAKRPEHNRSE-ALKVSCGKCGNGLGHEFLNDGPK 88
            RS+  H  P      T    SV   PEH R E A++     C    G   +  GP+
Sbjct: 2679 RSEEGHPGPGSRTGGTTRCRSVRSEPEHYRIEHAVEHGGSCCPEARGTRTVPPGPR 2846


>gi|338240467|gb|AFNH01002932.1| Gregarina niphandrodes asmbl.3636,
            whole genome shotgun sequence
          Length = 4379

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = +1

Query: 23   CAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEH--NRSEALKVSCGKCG 75
            C  C     S R  Y  ++P   F  ++H   +     H    S+ L  SCG+CG
Sbjct: 1333 CLTCDSWWRSLRPDYKMNTP--KFGRSLHWRCLRSPKRHILTGSKPLTASCGRCG 1491


>gi|338241644|gb|AFNH01002343.1| Gregarina niphandrodes asmbl.3089,
             whole genome shotgun sequence
          Length = 22229

 Score = 24.3 bits (51), Expect = 9.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 14    NHFEPGVYVCAKCGYELFSSRSKYAHSS 41
             N+F PG      C Y L SS +   HSS
Sbjct: 13740 NYFGPGSLTVNTCFYLLTSSPTSMKHSS 13657


  Database: gnipha.fa
    Posted date:  Nov 22, 2011  6:21 PM
  Number of letters in database: 15,362,869
  Number of sequences in database:  3680
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,084,614
Number of Sequences: 3680
Number of extensions: 56548
Number of successful extensions: 284
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of query: 116
length of database: 5,120,956
effective HSP length: 81
effective length of query: 35
effective length of database: 4,822,876
effective search space: 168800660
effective search space used: 168800660
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)
