TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: fcylin.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_7                                                             58   2e-09
scaffold_65                                                            42   2e-04
scaffold_21                                                            42   2e-04
scaffold_20                                                            42   2e-04
scaffold_1                                                             42   2e-04
scaffold_33                                                            40   5e-04
scaffold_3                                                             29   1.2  
scaffold_16                                                            28   2.0  
scaffold_14                                                            28   2.0  
scaffold_50                                                            27   4.4  
scaffold_11                                                            27   5.7  
scaffold_111                                                           27   7.5  
scaffold_10                                                            27   7.5  
scaffold_2                                                             27   7.5  
scaffold_48                                                            26   9.8  
scaffold_6                                                             26   9.8  

>scaffold_7
          Length = 2770240

 Score = 58.2 bits (139), Expect = 2e-09
 Identities = 32/93 (34%), Positives = 48/93 (51%)
 Frame = -2

Query: 19      GVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGL 78
               G+Y CA C  +LF S  KY  +S WP+F  +     V  + E +    L+  CG+C + L
Sbjct: 1122291 GLYNCAYCDLDLFDSDGKYEPNSGWPSFWRSTKDGHVTYKKEWD--GRLEAKCGRCDSHL 1122118

Query: 79      GHEFLNDGPKPGQSRFXIFSSSLKFVPKGKETS 111
               GH FL DGP P +    +  ++    P+G  T+
Sbjct: 1122117 GHVFL-DGPLPSKVEKDLLENAPASDPRGIRTN 1122022


>scaffold_65
          Length = 283846

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
 Frame = +2

Query: 19    GVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEAL----KVSCGKC 74
             G Y CA C   LF S+ K+   + WP+F   +    V K+   N   A     +V C  C
Sbjct: 16127 GTYNCAGCSTPLFLSKEKFHSGTGWPSFASALVGVEVEKK---NMLAATLGGSEVRCKNC 16297

Query: 75    GNGLGHEFLNDG--------PKPGQSRFXIFSSSLKFVP 105
             G  +G +  NDG         K G+ RF I   +L F P
Sbjct: 16298 GGHMG-DLFNDGYIFPGTPAEKTGK-RFCIDGVALNFKP 16408


>scaffold_21
          Length = 951085

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 12/99 (12%)
 Frame = +3

Query: 19     GVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEAL----KVSCGKC 74
              G Y CA C   LF S+ K+   + WP+F   +    V K+   N   A     +V C  C
Sbjct: 171528 GTYNCAGCSTPLFLSKEKFHSGTGWPSFASALVGVEVEKK---NMLAATLGGSEVRCKNC 171698

Query: 75     GNGLGHEFLNDG--------PKPGQSRFXIFSSSLKFVP 105
              G  +G +  NDG         K G+ RF I   +L F P
Sbjct: 171699 GGHMG-DLFNDGYIFPGTPAEKTGK-RFCIDGVALNFKP 171809


>scaffold_20
          Length = 1108856

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
 Frame = +3

Query: 19     GVYVCAKCGYELFSSRSKYAHSSPWPAFT-ETIHADSVAKR------------------- 58
              G YVCA C   LF+S SK++  + WP+F   +   DS++                     
Sbjct: 194163 GTYVCAGCNTPLFTSESKFSSGTGWPSFAYSSTSTDSISNTKSDGGSGGGGNEIGGVEIE 194342

Query: 59     ---PEHNRSEALKVSCGKCGNGLGHEFLNDG-------PKPGQSRFXIFSSSLKFVPKGK 108
                 P  +     +V C  CG  LG +  NDG             R+ I  S+L F P   
Sbjct: 194343 QLDPIRSALNGREVRCNTCGGHLG-DLFNDGYMYIGTSAFDSGQRYCIDGSALIFKP--- 194510

Query: 109    ETSASQG 115
               TS + G
Sbjct: 194511 -TSTTDG 194528


>scaffold_1
          Length = 5926375

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
 Frame = -2

Query: 19      GVYVCAKCGYELFSSRSKYAHSSPWPAF-----------TETIHADSVAKRPEHNRSEAL 67
               G YVCA C   LF+S SK++  + WP+F            E    +     P  +     
Sbjct: 4523865 GTYVCAGCNTPLFTSASKFSSGTGWPSFAYSYTGIGGGGNEIGGVEIEQLDPIRSALNGR 4523686

Query: 68      KVSCGKCGNGLGHEFLNDG 86
               +V C  CG  LG +  NDG
Sbjct: 4523685 EVRCNTCGGHLG-DLFNDG 4523632


>scaffold_33
          Length = 615088

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 17     EPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRS-EALKVSCGKCG 75
              + G + C  C   LF + +K+   + WP+F   I + +V    ++       +V+C +CG
Sbjct: 334597 DEGTFSCGGCNAALFVADAKFDSGTGWPSFFAPITSSAVDLNTDYKLIVPRTEVTCSQCG 334418

Query: 76     NGLGHEF 82
                LGH F
Sbjct: 334417 GHLGHVF 334397


>scaffold_3
          Length = 3437899

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -2

Query: 14      NHFEP--GVYVCAKCGYELFSSRSKYAHSSPWPAF 46
               N F P  G + C  CG  L+S  +K+     WPAF
Sbjct: 1330953 NRFFPQTGHFCCKACGNLLYSYETKFDVDDGWPAF 1330849


>scaffold_16
          Length = 1295603

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 16      FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN 62
               F+   Y C+KC Y   +    Y H  P P +   +HA+   K  E N
Sbjct: 1199660 FQQYHYFCSKCRY---TQSVIYYHYCPLPQYNHLLHAEVNKKFAEQN 1199529


>scaffold_14
          Length = 1349802

 Score = 28.5 bits (62), Expect = 2.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 16      FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN 62
               F+   Y C KC Y   +    Y H  P P +   +HA+   K  E N
Sbjct: 1211587 FQQYHYFCTKCRY---TQSVIYYHCCPLPKYNRLLHAEVNKKFAEQN 1211456


>scaffold_50
          Length = 420730

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 27     GYELFSSRSKYAHSSPW 43
              G  L SSRS+++HS PW
Sbjct: 413016 GVNLKSSRSRFSHSDPW 412966


>scaffold_11
          Length = 1700871

 Score = 26.9 bits (58), Expect = 5.7
 Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = -2

Query: 10      EVFQNHFEPGVYVCAKCGYELF---SSRSKYAHSSPWPAFTETIH 51
               E+F  HF P    C  CG  +      R ++   +  P F E+IH
Sbjct: 1117916 EIFVRHFVPCKISC*VCGVRVLDPNGQRDQHKIHNSLPIFVESIH 1117782


>scaffold_111
          Length = 75749

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 20   VYVCAKCGYELFSSRSKYAHSSPWPAFTE-TIHADS 54
            V+VC+ CG E    R +      W +F E T+  DS
Sbjct: 8397 VFVCSNCGGESVQWRGRCPTCKEWNSFQEVTVQRDS 8504


>scaffold_10
          Length = 1906272

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = -2

Query: 9       GEVFQNH----FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIH 51
               GEVF +H    F  G   C  C  ++  S+S  +H     AF  T+H
Sbjct: 1614098 GEVFGSHVCWHFSRGCICCD*CQGKINQSQSTISHRHNSCAFPSTLH 1613958


>scaffold_2
          Length = 3822992

 Score = 26.6 bits (57), Expect = 7.5
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -3

Query: 20      VYVCAKCGYELFSSRSKYAHSSPWPAFTE-TIHADS 54
               V+VC+ CG E    R +      W +F E T+  DS
Sbjct: 1035960 VFVCSNCGGESVQWRGRCPTCKEWNSFQEVTVQRDS 1035853


>scaffold_48
          Length = 420661

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -1

Query: 21     YVCAKCGY-----ELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRS 64
              YVC +CG      +      KY H SPW A T+    D+ +  P H +S
Sbjct: 170818 YVC-ECGIRE*MEDKRREEYKYQHRSPWQATTK----DNTSYSPNHLKS 170687


>scaffold_6
          Length = 2967614

 Score = 26.2 bits (56), Expect = 9.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 61      HNRSEALKVSCGKCGNG--LGHEFLNDGPKPGQSRFXIFSSSL 101
               H++ +  KVS  KCG+G  L H+FL D  +P +    + S  L
Sbjct: 1390548 HHQFQRPKVS--KCGHG*WLQHDFLQDETQPYKDAMHVPSDEL 1390426


  Database: fcylin.fa
    Posted date:  Nov 22, 2011  6:18 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,628,569
Number of Sequences: 271
Number of extensions: 193835
Number of successful extensions: 741
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 258
length of query: 116
length of database: 26,846,802
effective HSP length: 91
effective length of query: 25
effective length of database: 26,822,141
effective search space: 670553525
effective search space used: 670553525
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
