TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1
(SelR1) # Homo sapiens # Complete
         (116 letters)

Database: arara.fa 
           3231 sequences; 1,450,095 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|330849826|gb|ADNL01000777.1| Astrammina rara contig00889, who...    24   1.0  
gi|330848301|gb|ADNL01002302.1| Astrammina rara contig02749, who...    23   1.4  
gi|330849660|gb|ADNL01000943.1| Astrammina rara contig01099, who...    23   1.4  
gi|330847608|gb|ADNL01002995.1| Astrammina rara contig00683, who...    23   1.8  
gi|330847895|gb|ADNL01002708.1| Astrammina rara contig03197, who...    22   4.0  
gi|330849646|gb|ADNL01000957.1| Astrammina rara contig01114, who...    22   4.0  
gi|330849828|gb|ADNL01000775.1| Astrammina rara contig00887, who...    22   4.0  
gi|330848014|gb|ADNL01002589.1| Astrammina rara contig03064, who...    21   6.8  
gi|330848620|gb|ADNL01001983.1| Astrammina rara contig02357, who...    21   6.8  
gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, who...    21   6.8  
gi|330848230|gb|ADNL01002373.1| Astrammina rara contig02828, who...    21   8.8  

>gi|330849826|gb|ADNL01000777.1| Astrammina rara contig00889, whole
           genome shotgun sequence
          Length = 449

 Score = 23.9 bits (50), Expect = 1.0
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 16  FEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVS 70
           F  G +   KC + + S  +  + SSP P  T  + + S++K   H+  + L  S
Sbjct: 243 FLAGEH*TLKCTFSMLSL*ALLSSSSPPPLITLNLSSCSISKVQLHSLFKYLATS 407


>gi|330848301|gb|ADNL01002302.1| Astrammina rara contig02749, whole
           genome shotgun sequence
          Length = 1107

 Score = 23.5 bits (49), Expect = 1.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 8   GGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWP 44
           GG+ +Q    PGV VC     +L + + ++A +  WP
Sbjct: 960 GGDGWQESV-PGVCVCGTRRVQLSTQQFQWASARLWP 1067


>gi|330849660|gb|ADNL01000943.1| Astrammina rara contig01099, whole
           genome shotgun sequence
          Length = 537

 Score = 23.5 bits (49), Expect = 1.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 13  QNHFEPGVYVCAKCG 27
           Q HF   VY CA+CG
Sbjct: 235 QVHFNKCVYGCAQCG 191


>gi|330847608|gb|ADNL01002995.1| Astrammina rara contig00683, whole
           genome shotgun sequence
          Length = 1739

 Score = 23.1 bits (48), Expect = 1.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 87  PKPGQSRFXIFSSSLKFVPKGK 108
           PKP       F ++L F+P+G+
Sbjct: 753 PKPPPKTLIRFEAALNFIPEGR 688


>gi|330847895|gb|ADNL01002708.1| Astrammina rara contig03197, whole
            genome shotgun sequence
          Length = 3696

 Score = 21.9 bits (45), Expect = 4.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 37   YAHSSPWPAFTETIHADSVAK 57
            YA S  WP F  T  +DSV++
Sbjct: 989  YA*SLSWPGF*NTNLSDSVSR 1051


>gi|330849646|gb|ADNL01000957.1| Astrammina rara contig01114,
          whole genome shotgun sequence
          Length = 462

 Score = 21.9 bits (45), Expect = 4.0
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 44 PAFTETIHADSVAKRPEHNRSEALKVSCGKCGNGLGHEFLNDGP 87
          P   ET    +   RP H+ +    V  G+    +G   LND P
Sbjct: 38 PVGLETQPGTATGARPAHSTAGRSAVCTGRTPVAVGTFRLNDPP 169


>gi|330849828|gb|ADNL01000775.1| Astrammina rara contig00887, whole
           genome shotgun sequence
          Length = 350

 Score = 21.9 bits (45), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 21  YVCAKCGYELFSSRS 35
           +VC +CG E  SSR+
Sbjct: 198 FVCERCGQEKRSSRN 154


>gi|330848014|gb|ADNL01002589.1| Astrammina rara contig03064,
          whole genome shotgun sequence
          Length = 190

 Score = 21.2 bits (43), Expect = 6.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 19 GVYVCAKCGYELFSSRSKYAHSSP 42
          G +VC     ++F+   KYA  SP
Sbjct: 3  GSHVCMSEDIQMFAILEKYALDSP 74


>gi|330848620|gb|ADNL01001983.1| Astrammina rara contig02357, whole
           genome shotgun sequence
          Length = 176

 Score = 21.2 bits (43), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 18  PGVYVCAKCGYELFSSR 34
           PGVY+C+   +  F +R
Sbjct: 90  PGVYLCSSHAFVAFXTR 140


>gi|330850545|gb|ADNL01000058.1| Astrammina rara contig00061, whole
           genome shotgun sequence
          Length = 9271

 Score = 21.2 bits (43), Expect = 6.8
 Identities = 9/31 (29%), Positives = 13/31 (41%)
 Frame = -1

Query: 41  SPWPAFTETIHADSVAKRPEHNRSEALKVSC 71
           S WP F   +   S  +    N+ +  KV C
Sbjct: 490 STWPNFAT*LRMSSYIQTYHENKIQESKVGC 398


>gi|330848230|gb|ADNL01002373.1| Astrammina rara contig02828, whole
           genome shotgun sequence
          Length = 3691

 Score = 20.8 bits (42), Expect = 8.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -1

Query: 17  EPGVYVCAKC 26
           +PG++ C KC
Sbjct: 226 QPGIHACIKC 197


  Database: arara.fa
    Posted date:  Nov 22, 2011  5:41 PM
  Number of letters in database: 1,450,095
  Number of sequences in database:  3231
  
Lambda     K      H
   0.318    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,020
Number of Sequences: 3231
Number of extensions: 3395
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 116
length of database: 483,365
effective HSP length: 64
effective length of query: 52
effective length of database: 276,581
effective search space: 14382212
effective search space used: 14382212
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)
