TBLASTN 2.2.13 [Nov-27-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= SPP00000025_1.0 # Protein # Selenoprotein T (SelT) # Homo
sapiens # Complete
         (195 letters)

Database: F.cylindrus/genome.fa 
           271 sequences; 80,540,407 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

scaffold_11                                                            71   1e-12
scaffold_9                                                             70   2e-12

>scaffold_11
          Length = 1700871

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
 Frame = -3

Query: 44     QICVSUGYRRVFEEYMRVISQRYPDIR--IEGENYLPQPIYRHIASFLSVFKLVLIGLII 101
              Q CVS G +R F +    + Q +P++R  + G+NY P PI   +  FLSV +L  + + +
Sbjct: 900676 QFCVS*GSKRNFLQVRDWLEQTFPELRGKVTGDNYPPPPIAELLMKFLSVIQLAGMAVAL 900497

Query: 102    VGKDPFAFFGMQAPSIWQWGQ---ENKVYACMMVFFLSNMIENQCMSTGAFEITLNDV-P 157
              +G++ F F GM  P  W +G    +N V   + ++ +   I N  + + AFE+ L+    
Sbjct: 900496 IGENVFRFIGMSRPPSW-YGDIVVKNAVPLGIGLYLIVPQILNGYIVSNAFEVVLDGTET 900320

Query: 158    VWSKLESGHLPSMQQLVQIL 177
              ++SK+ +G +P+ + L+  L
Sbjct: 900319 IFSKIATGRMPAAEDLIDPL 900260


>scaffold_9
          Length = 2734635

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 43/140 (30%), Positives = 77/140 (55%), Gaps = 6/140 (4%)
 Frame = -3

Query: 44      QICVSUGYRRVFEEYMRVISQRYPDIR--IEGENYLPQPIYRHIASFLSVFKLVLIGLII 101
               Q CVS G +R F +    + Q +P++R  + G+NY P PI   +  FLSV +L  + + +
Sbjct: 2406061 QFCVS*GSKRNFLQVRDWLEQTFPELRGKVTGDNYPPPPIAELLMKFLSVIQLAGMAVAL 2405882

Query: 102     VGKDPFAFFGMQAPSIWQWGQ---ENKVYACMMVFFLSNMIENQCMSTGAFEITLNDV-P 157
               +G++ F F GM  P  W +G    +N V   + ++ +   I N  + + AFE+ L+    
Sbjct: 2405881 MGENVFRFIGMSRPPSW-YGDIVVKNAVPLGIGLYLIVPQILNGYIVSNAFEVVLDGTET 2405705

Query: 158     VWSKLESGHLPSMQQLVQIL 177
               ++SK+ +G +P+ + L+  L
Sbjct: 2405704 IFSKIATGRMPAAEDLIDPL 2405645


  Database: F.cylindrus/genome.fa
    Posted date:  Nov 21, 2011  7:46 PM
  Number of letters in database: 80,540,407
  Number of sequences in database:  271
  
Lambda     K      H
   0.325    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,450,877
Number of Sequences: 271
Number of extensions: 227536
Number of successful extensions: 1286
Number of sequences better than 1.0e-04: 2
Number of HSP's better than  0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1187
Number of HSP's gapped (non-prelim): 275
length of query: 195
length of database: 26,846,802
effective HSP length: 101
effective length of query: 94
effective length of database: 26,819,431
effective search space: 2521026514
effective search space used: 2521026514
frameshift window, decay const: 40,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)